Pir (pirin) - Rat Genome Database

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Gene: Pir (pirin) Mus musculus
Analyze
Symbol: Pir
Name: pirin
RGD ID: 1550049
MGI Page MGI
Description: Predicted to enable metal ion binding activity; quercetin 2,3-dioxygenase activity; and transcription coregulator activity. Acts upstream of or within myeloid cell differentiation. Predicted to be located in cytosol and nuclear body. Predicted to be active in nucleus. Orthologous to human PIR (pirin).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 2310042L19Rik; iron-binding nuclear protein; pirin like; Pirnl; probable quercetin 2,3-dioxygenase PIR; probable quercetinase
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39X163,052,427 - 163,156,009 (+)NCBIGRCm39GRCm39mm39
GRCm39 EnsemblX163,052,367 - 163,156,007 (+)EnsemblGRCm39 Ensembl
GRCm38X164,269,431 - 164,373,013 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 EnsemblX164,269,371 - 164,373,011 (+)EnsemblGRCm38mm10GRCm38
MGSCv37X160,707,363 - 160,810,945 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36X159,613,542 - 159,717,010 (+)NCBIMGSCv36mm8
CeleraX147,485,273 - 147,588,412 (+)NCBICelera
Cytogenetic MapXF5NCBI
cM MapX76.12NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(1->4)-beta-D-glucan  (EXP)
1,1-dichloroethene  (EXP)
1,2-dichloroethane  (EXP)
1,2-dimethylhydrazine  (EXP)
1,3-dinitrobenzene  (ISO)
1,4-phenylenediamine  (ISO)
1-chloro-2,4-dinitrobenzene  (ISO)
1-nitropyrene  (ISO)
17beta-estradiol  (ISO)
2,2',4,4'-Tetrabromodiphenyl ether  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,3,7,8-Tetrachlorodibenzofuran  (ISO)
2,4,6-trinitrobenzenesulfonic acid  (ISO)
2,4,6-trinitrotoluene  (ISO)
2,4-dinitrotoluene  (ISO)
2,6-dinitrotoluene  (ISO)
2-amino-4,6-dinitrotoluene  (ISO)
2-methylcholine  (ISO)
3-chloropropane-1,2-diol  (ISO)
3-isobutyl-1-methyl-7H-xanthine  (ISO)
3-phenylprop-2-enal  (ISO)
4,4'-sulfonyldiphenol  (EXP)
4-amino-2,6-dinitrotoluene  (ISO)
4-hydroxyphenyl retinamide  (ISO)
5-fluorouracil  (ISO)
9-cis-retinoic acid  (ISO)
acetamide  (ISO)
acrolein  (ISO)
acrylamide  (ISO)
adefovir pivoxil  (ISO)
aflatoxin B1  (EXP,ISO)
Aflatoxin B2 alpha  (ISO)
all-trans-4-oxoretinoic acid  (ISO)
all-trans-retinoic acid  (ISO)
alpha-pinene  (ISO)
ampicillin  (ISO)
antimonite  (ISO)
antirheumatic drug  (ISO)
aristolochic acid A  (ISO)
arsenite(3-)  (EXP,ISO)
arsenous acid  (ISO)
benzo[a]pyrene  (EXP,ISO)
benzo[e]pyrene  (ISO)
benzylpenicillin  (ISO)
beta-naphthoflavone  (ISO)
bisphenol A  (EXP,ISO)
Bisphenol B  (ISO)
bisphenol F  (ISO)
bortezomib  (ISO)
bromobenzene  (ISO)
cadmium dichloride  (ISO)
cadmium sulfate  (EXP)
carbamazepine  (ISO)
carbon nanotube  (EXP)
cefaloridine  (ISO)
CGP 52608  (ISO)
chloroacetaldehyde  (ISO)
chlorohydrocarbon  (ISO)
chloroprene  (EXP,ISO)
chlorpromazine  (ISO)
cidofovir anhydrous  (ISO)
cisplatin  (ISO)
clodronic acid  (ISO)
cobalt atom  (ISO)
cobalt dichloride  (ISO)
copper atom  (ISO)
copper(0)  (ISO)
curcumin  (ISO)
cyclosporin A  (ISO)
dexamethasone  (ISO)
diarsenic trioxide  (ISO)
diethyl maleate  (EXP)
diethylstilbestrol  (ISO)
dioxygen  (ISO)
dipotassium bis[mu-tartrato(4-)]diantimonate(2-) trihydrate  (ISO)
diquat  (EXP)
dorsomorphin  (ISO)
doxorubicin  (ISO)
entinostat  (ISO)
fenofibrate  (ISO)
finasteride  (ISO)
fipronil  (ISO)
flutamide  (ISO)
formaldehyde  (ISO)
gentamycin  (ISO)
hydrogen peroxide  (ISO)
indole-3-methanol  (ISO)
indometacin  (ISO)
inulin  (EXP)
isoflavones  (ISO)
isoprenaline  (EXP)
isotretinoin  (ISO)
ivermectin  (ISO)
lead diacetate  (ISO)
lead(0)  (ISO)
leflunomide  (ISO)
lipopolysaccharide  (ISO)
mercury dibromide  (ISO)
mercury dichloride  (ISO)
metformin  (ISO)
methapyrilene  (ISO)
methylmercury chloride  (ISO)
mitomycin C  (ISO)
N(6)-dimethylallyladenine  (ISO)
N-methyl-4-phenylpyridinium  (ISO)
N-nitrosodiethylamine  (ISO)
nefazodone  (ISO)
nevirapine  (ISO)
nickel sulfate  (ISO)
nimesulide  (ISO)
oxaliplatin  (ISO)
ozone  (ISO)
p-chloromercuribenzoic acid  (ISO)
paracetamol  (EXP,ISO)
paraquat  (ISO)
pentachlorophenol  (EXP)
perfluorohexanesulfonic acid  (EXP)
perfluorooctane-1-sulfonic acid  (EXP)
phenobarbital  (EXP)
phenoxymethylpenicillin  (ISO)
phenylmercury acetate  (ISO)
pirinixic acid  (EXP,ISO)
quercetin  (ISO)
rotenone  (ISO)
S-(1,2-dichlorovinyl)-L-cysteine  (ISO)
SB 431542  (ISO)
sodium arsenite  (ISO)
sodium dodecyl sulfate  (ISO)
succimer  (ISO)
sulfamethoxazole  (ISO)
sulforaphane  (ISO)
sunitinib  (ISO)
tetrachloromethane  (ISO)
thimerosal  (ISO)
thioacetamide  (ISO)
topotecan  (ISO)
trichloroethene  (ISO)
triphenyl phosphate  (ISO)
triptonide  (EXP)
Tungsten carbide  (ISO)
tunicamycin  (ISO)
urethane  (ISO)
valdecoxib  (ISO)
valproic acid  (EXP,ISO)
vincaleukoblastine  (ISO)
vinclozolin  (ISO)
xylitol  (ISO)
zoledronic acid  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
cytoplasm  (ISO)
cytosol  (ISO)
nuclear body  (ISO)
nucleoplasm  (ISO)
nucleus  (IBA,ISO)

Molecular Function

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
References

References - curated
# Reference Title Reference Citation
1. Functional annotation of a full-length mouse cDNA collection. Kawai J, etal., Nature. 2001 Feb 8;409(6821):685-90.
2. Identification of key genes and pathways associated with cholangiocarcinoma development based on weighted gene correlation network analysis. Liu J, etal., PeerJ. 2019 Oct 31;7:e7968. doi: 10.7717/peerj.7968. eCollection 2019.
3. MGDs mouse GO annotations MGD data from the GO Consortium
4. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
5. Mouse MP Annotation Import Pipeline RGD automated import pipeline
6. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:8889548   PMID:9079676   PMID:10349636   PMID:11042159   PMID:11076861   PMID:12477932   PMID:12520002   PMID:14610273   PMID:16141072   PMID:16141073   PMID:18799693   PMID:19372376  
PMID:20010624   PMID:20059953   PMID:20548051   PMID:21677750   PMID:21801495   PMID:21873635  


Genomics

Comparative Map Data
Pir
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39X163,052,427 - 163,156,009 (+)NCBIGRCm39GRCm39mm39
GRCm39 EnsemblX163,052,367 - 163,156,007 (+)EnsemblGRCm39 Ensembl
GRCm38X164,269,431 - 164,373,013 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 EnsemblX164,269,371 - 164,373,011 (+)EnsemblGRCm38mm10GRCm38
MGSCv37X160,707,363 - 160,810,945 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36X159,613,542 - 159,717,010 (+)NCBIMGSCv36mm8
CeleraX147,485,273 - 147,588,412 (+)NCBICelera
Cytogenetic MapXF5NCBI
cM MapX76.12NCBI
PIR
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38X15,384,799 - 15,493,333 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 EnsemblX15,384,799 - 15,493,564 (-)EnsemblGRCh38hg38GRCh38
GRCh37X15,402,921 - 15,511,456 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36X15,312,842 - 15,421,385 (-)NCBINCBI36Build 36hg18NCBI36
Build 34X15,162,582 - 15,271,113NCBI
CeleraX19,518,436 - 19,626,837 (-)NCBICelera
Cytogenetic MapXp22.2NCBI
HuRefX13,159,639 - 13,268,835 (-)NCBIHuRef
CHM1_1X15,433,843 - 15,542,647 (-)NCBICHM1_1
T2T-CHM13v2.0X14,967,733 - 15,076,309 (-)NCBIT2T-CHM13v2.0
Pir
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8X33,740,428 - 33,851,049 (-)NCBIGRCr8
mRatBN7.2X30,108,536 - 30,219,269 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 EnsemblX30,108,538 - 30,219,218 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_UtxX31,147,941 - 31,251,719 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0X34,578,429 - 34,689,049 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0X30,772,761 - 30,876,540 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0X31,852,322 - 31,968,152 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 EnsemblX31,852,323 - 31,968,152 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0X32,226,073 - 32,341,358 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4X50,864,981 - 50,974,861 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1X50,918,450 - 51,028,330 (-)NCBI
CeleraX30,455,202 - 30,563,741 (-)NCBICelera
Cytogenetic MapXq14NCBI
Pir
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555192,698,172 - 2,813,206 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049555192,698,207 - 2,813,201 (+)NCBIChiLan1.0ChiLan1.0
PIR
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2X17,184,000 - 17,294,535 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1X17,187,666 - 17,297,896 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0X8,011,382 - 8,121,994 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1X15,294,094 - 15,403,506 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 EnsemblX15,294,099 - 15,404,004 (-)Ensemblpanpan1.1panPan2
PIR
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1X11,627,337 - 11,733,489 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 EnsemblX11,627,337 - 11,733,489 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_TashaX11,534,820 - 11,640,316 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0X11,589,671 - 11,695,482 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 EnsemblX11,589,671 - 11,695,478 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1X11,652,577 - 11,758,046 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0X11,643,915 - 11,752,389 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0X11,672,015 - 11,777,580 (-)NCBIUU_Cfam_GSD_1.0
Pir
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2X4,794,803 - 4,902,157 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364704,793,823 - 4,902,471 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364704,794,803 - 4,902,211 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PIR
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 EnsemblX11,934,163 - 12,033,746 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1X11,934,157 - 12,034,629 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2X12,894,760 - 12,994,430 (-)NCBISscrofa10.2Sscrofa10.2susScr3
PIR
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1X13,854,356 - 13,966,554 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 EnsemblX13,854,236 - 13,966,506 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605615,690,384 - 15,800,824 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Pir
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624829180,129 - 286,429 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624829181,918 - 286,348 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Pir
2554 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:584
Count of miRNA genes:416
Interacting mature miRNAs:479
Transcripts:ENSMUST00000033749, ENSMUST00000123343, ENSMUST00000127685, ENSMUST00000129296, ENSMUST00000145412
Prediction methods:Miranda, Pita, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1302000Pgia25_mproteoglycan induced arthritis 2 (mouse)Not determinedX144474380169476592Mouse
1357619Obsty5_mobesity 5 (mouse)Not determinedX160212893164149284Mouse
1558900Bw3_mbody weight QTL 3 (mouse)Not determinedX133540040165298595Mouse
10401118Pgia39_mproteoglycan induced arthritis 39 (mouse)Not determinedX144474380169476592Mouse
12738421Lfibq17_mliver fibrosis QTL 17 (mouse)X148148453164945064Mouse

Markers in Region
px-23h9  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38X164,299,384 - 164,299,485UniSTSGRCm38
MGSCv37X160,737,316 - 160,737,417UniSTSGRCm37
CeleraX147,515,185 - 147,515,286UniSTS
Cytogenetic MapXF5UniSTS


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001301402 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_027153 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036162089 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036162090 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AF345635 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK009757 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK082922 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK090023 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK134541 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK138314 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK151301 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL671706 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL732475 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC024062 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BY504889 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BY718294 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BY720928 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466571 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSMUST00000033749   ⟹   ENSMUSP00000033749
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 EnsemblX163,052,427 - 163,156,007 (+)Ensembl
GRCm38.p6 EnsemblX164,269,431 - 164,373,011 (+)Ensembl
RefSeq Acc Id: ENSMUST00000123343
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 EnsemblX163,052,569 - 163,092,773 (+)Ensembl
GRCm38.p6 EnsemblX164,269,573 - 164,309,777 (+)Ensembl
RefSeq Acc Id: ENSMUST00000127685
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 EnsemblX163,052,507 - 163,054,870 (+)Ensembl
GRCm38.p6 EnsemblX164,269,511 - 164,271,874 (+)Ensembl
RefSeq Acc Id: ENSMUST00000129296
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 EnsemblX163,052,543 - 163,127,655 (+)Ensembl
GRCm38.p6 EnsemblX164,269,547 - 164,344,659 (+)Ensembl
RefSeq Acc Id: ENSMUST00000145412   ⟹   ENSMUSP00000118045
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 EnsemblX163,052,367 - 163,152,108 (+)Ensembl
GRCm38.p6 EnsemblX164,269,371 - 164,369,112 (+)Ensembl
RefSeq Acc Id: NM_001301402   ⟹   NP_001288331
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39X163,052,427 - 163,156,009 (+)NCBI
GRCm38X164,269,431 - 164,373,013 (+)NCBI
CeleraX147,485,273 - 147,588,412 (+)NCBI
Sequence:
RefSeq Acc Id: NM_027153   ⟹   NP_081429
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39X163,052,427 - 163,156,009 (+)NCBI
GRCm38X164,269,431 - 164,373,013 (+)ENTREZGENE
MGSCv37X160,707,363 - 160,810,945 (+)RGD
CeleraX147,485,273 - 147,588,412 (+)RGD
cM MapX ENTREZGENE
Sequence:
RefSeq Acc Id: XM_036162089   ⟹   XP_036017982
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39X163,052,430 - 163,155,891 (+)NCBI
Sequence:
RefSeq Acc Id: XM_036162090   ⟹   XP_036017983
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39X163,052,432 - 163,155,891 (+)NCBI
Sequence:
RefSeq Acc Id: NP_081429   ⟸   NM_027153
- Peptide Label: isoform 1
- UniProtKB: Q3UAN0 (UniProtKB/Swiss-Prot),   A2AIH9 (UniProtKB/Swiss-Prot),   Q8CIE9 (UniProtKB/Swiss-Prot),   Q9D711 (UniProtKB/Swiss-Prot),   A2AIH8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001288331   ⟸   NM_001301402
- Peptide Label: isoform 2
- Sequence:
RefSeq Acc Id: ENSMUSP00000118045   ⟸   ENSMUST00000145412
RefSeq Acc Id: ENSMUSP00000033749   ⟸   ENSMUST00000033749
RefSeq Acc Id: XP_036017982   ⟸   XM_036162089
- Peptide Label: isoform X1
- UniProtKB: Q9D711 (UniProtKB/Swiss-Prot),   Q3UAN0 (UniProtKB/Swiss-Prot),   A2AIH9 (UniProtKB/Swiss-Prot),   Q8CIE9 (UniProtKB/Swiss-Prot),   A2AIH8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_036017983   ⟸   XM_036162090
- Peptide Label: isoform X2
- UniProtKB: A2AIH8 (UniProtKB/TrEMBL)
Protein Domains
Pirin C-terminal   Pirin N-terminal

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q9D711-F1-model_v2 AlphaFold Q9D711 1-290 view protein structure

Promoters
RGD ID:6846096
Promoter ID:MM_KWN:62690
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Lung,   MEF_B6
Transcripts:OTTMUST00000046597,   OTTMUST00000046599,   OTTMUST00000046600,   OTTMUST00000046601,   UC009UVK.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36X160,707,401 - 160,707,901 (+)MPROMDB
RGD ID:13681820
Promoter ID:EPDNEW_M25058
Type:initiation region
Name:Pir_1
Description:Mus musculus pirin , transcript variant 2, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38X164,269,512 - 164,269,572EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1916906 AgrOrtholog
Ensembl Genes ENSMUSG00000031379 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000033749 ENTREZGENE
  ENSMUST00000033749.9 UniProtKB/Swiss-Prot
  ENSMUST00000145412 ENTREZGENE
  ENSMUST00000145412.8 UniProtKB/TrEMBL
Gene3D-CATH 2.60.120.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro Pirin UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Pirin_C_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Pirin_N_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  RmlC-like_jellyroll UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  RmlC_Cupin_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:69656 UniProtKB/Swiss-Prot
MGD MGI:1916906 ENTREZGENE
NCBI Gene 69656 ENTREZGENE
PANTHER PIRIN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR13903 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Pirin UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Pirin_C UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Pir PhenoGen
PIRSF Pirin UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF51182 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A2AIH8 ENTREZGENE, UniProtKB/TrEMBL
  A2AIH9 ENTREZGENE
  PIR_MOUSE UniProtKB/Swiss-Prot
  Q3UAN0 ENTREZGENE
  Q8CIE9 ENTREZGENE
  Q9D711 ENTREZGENE
UniProt Secondary A2AIH9 UniProtKB/Swiss-Prot
  Q3UAN0 UniProtKB/Swiss-Prot
  Q8CIE9 UniProtKB/Swiss-Prot