Rabepk (Rab9 effector protein with kelch motifs) - Rat Genome Database

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Gene: Rabepk (Rab9 effector protein with kelch motifs) Mus musculus
Analyze
Symbol: Rabepk
Name: Rab9 effector protein with kelch motifs
RGD ID: 1550030
MGI Page MGI
Description: Predicted to be located in intracellular membrane-bounded organelle. Is expressed in embryo. Orthologous to human RABEPK (Rab9 effector protein with kelch motifs).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 8430412M01Rik; 9530020D24Rik; AV073337; C87311; Rab9 effector p40; Rab9p40; RP23-446N16.2
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39234,662,946 - 34,690,200 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl234,667,568 - 34,689,924 (-)EnsemblGRCm39 Ensembl
GRCm38234,774,609 - 34,800,196 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl234,777,556 - 34,799,912 (-)EnsemblGRCm38mm10GRCm38
MGSCv37234,634,186 - 34,655,311 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36234,600,675 - 34,621,800 (-)NCBIMGSCv36mm8
Celera234,479,143 - 34,500,323 (-)NCBICelera
Cytogenetic Map2BNCBI
cM Map222.94NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Functional annotation of a full-length mouse cDNA collection. Kawai J, etal., Nature. 2001 Feb 8;409(6821):685-90.
2. Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse development. Ko MS, etal., Development 2000 Apr;127(8):1737-49.
3. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
4. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
5. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:8889548   PMID:10349636   PMID:10922068   PMID:11042159   PMID:11076861   PMID:12477932   PMID:14610273   PMID:15489334   PMID:15782199   PMID:16141072   PMID:16141073   PMID:16847323  
PMID:18799693   PMID:21267068   PMID:21677750   PMID:32325033  


Genomics

Comparative Map Data
Rabepk
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39234,662,946 - 34,690,200 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl234,667,568 - 34,689,924 (-)EnsemblGRCm39 Ensembl
GRCm38234,774,609 - 34,800,196 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl234,777,556 - 34,799,912 (-)EnsemblGRCm38mm10GRCm38
MGSCv37234,634,186 - 34,655,311 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36234,600,675 - 34,621,800 (-)NCBIMGSCv36mm8
Celera234,479,143 - 34,500,323 (-)NCBICelera
Cytogenetic Map2BNCBI
cM Map222.94NCBI
RABEPK
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh389125,200,542 - 125,234,161 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl9125,200,542 - 125,234,161 (+)EnsemblGRCh38hg38GRCh38
GRCh379127,962,821 - 127,996,440 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 369127,002,874 - 127,036,259 (+)NCBINCBI36Build 36hg18NCBI36
Celera998,610,755 - 98,644,425 (+)NCBICelera
Cytogenetic Map9q33.3NCBI
HuRef997,575,423 - 97,609,024 (+)NCBIHuRef
CHM1_19128,111,877 - 128,146,185 (+)NCBICHM1_1
T2T-CHM13v2.09137,398,878 - 137,432,478 (+)NCBIT2T-CHM13v2.0
Rabepk
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8338,460,205 - 38,481,077 (-)NCBIGRCr8
mRatBN7.2318,061,299 - 18,083,191 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl318,061,574 - 18,083,191 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx321,130,771 - 21,151,000 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0329,715,795 - 29,736,024 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0327,969,432 - 27,989,871 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0313,845,352 - 13,865,843 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl313,845,361 - 13,865,843 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0319,164,922 - 19,185,412 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4313,790,808 - 13,811,327 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1313,687,180 - 13,707,699 (-)NCBI
Celera312,783,843 - 12,804,301 (-)NCBICelera
Cytogenetic Map3p11NCBI
Rabepk
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554193,061,838 - 3,091,020 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554193,061,838 - 3,096,693 (-)NCBIChiLan1.0ChiLan1.0
RABEPK
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21114,129,490 - 14,167,619 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1914,131,838 - 14,169,967 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0996,311,269 - 96,349,433 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.19124,836,057 - 124,863,049 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl9124,836,057 - 124,863,049 (+)Ensemblpanpan1.1panPan2
RABEPK
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1957,857,269 - 57,877,333 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl957,857,269 - 57,883,761 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha957,057,134 - 57,077,183 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0958,777,947 - 58,797,659 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl958,777,947 - 58,809,553 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1957,536,110 - 57,556,338 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0957,852,819 - 57,873,069 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0957,943,499 - 57,963,812 (-)NCBIUU_Cfam_GSD_1.0
Rabepk
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404947193,552,324 - 193,578,082 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493648713,324,168 - 13,346,638 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493648713,320,988 - 13,346,609 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RABEPK
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1265,905,210 - 265,929,061 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11265,898,306 - 265,929,062 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21299,672,840 - 299,702,585 (-)NCBISscrofa10.2Sscrofa10.2susScr3
RABEPK
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11212,923,405 - 12,953,907 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1212,927,976 - 12,951,249 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660793,152,338 - 3,187,313 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Rabepk
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247609,990,831 - 10,018,869 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247609,992,321 - 10,025,015 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Rabepk
715 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:1399
Count of miRNA genes:660
Interacting mature miRNAs:791
Transcripts:ENSMUST00000047963, ENSMUST00000113086, ENSMUST00000118108, ENSMUST00000140663, ENSMUST00000141099, ENSMUST00000144113, ENSMUST00000145903
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1301769Orgwq2_morgan weight QTL 2 (mouse)Not determined2388712693421651Mouse
1301980Fcsa5_mfemoral cross-sectional area 5 (mouse)Not determined2767911541679261Mouse
1301790Pcfm1_mperiosteal circumference and femur length 1 (mouse)Not determined2823629642236396Mouse
10043876Adip22_madiposity 22 (mouse)Not determined2830805142308240Mouse
1300624Insq7_minsulin QTL 7 (mouse)Not determined2938444643384575Mouse
10755513Amzn4_manatomical modifier of Zfp423 4 (mouse)2938444643384575Mouse
8552707Cia23_mcollagen induced arthritis QTL 23 (mouse)Not determined21212953766556453Mouse
1301641Sbmd2_mspinal bone mineral density 2 (mouse)Not determined21421456748214713Mouse
1357881Estoq1_membryo survival total QTL 1 (mouse)Not determined220897778118894840Mouse
1357454Kidq1_mkidney weight QTL 1 (mouse)Not determined220897778118894840Mouse
1357436Splq1_mspleen weight QTL 1 (mouse)Not determined220897778118894840Mouse
39128209Lwq14_mliver weight QTL 14 (mouse)220897778118894840Mouse
1558899Egq1_mearly growth QTL 1 (mouse)Not determined220897778118894840Mouse
1558966W10q9_mweight 10 weeks QTL 9 (mouse)Not determined220897778118894840Mouse
1558915W3q1_mweight 3 weeks QTL 1 (mouse)Not determined220897778118894840Mouse
1558738W6q1_mweight 6 weeks QTL 1 (mouse)Not determined220897778118894840Mouse
1357681Hrtq1_mheart weight QTL 1 (mouse)Not determined220897778118894840Mouse
1301376Etohc1_methanol consumption 1 (mouse)Not determined22112972555129871Mouse
4141708Pbwg1.2_mpostnatal body weight growth 1.2 (mouse)Not determined2112972555129871Mouse
13463470Tubisq1_mtubulointerstitial injury severity, QTL 1 (mouse)22368914557689269Mouse
1302174Dssc2_mdextran sodium sulfate induced colitis QTL2 (mouse)Not determined224224632148700377Mouse
26884438Sklq12_mskull length QTL 12, 16 week (mouse)22459001254890012Mouse
12792980Fbmd1_mfemoral bone mineral density 1, females only (mouse)22503449245034492Mouse
4142130Pgis2_mproteoglycan induced spondylitis 2 (mouse)Not determined22530805156971811Mouse
12904005Cfq2_mconditioned fear QTL 2 (mouse)22702264256396228Mouse
1300577Capsq1_mcapsaicin sensitivity related QTL 1 (mouse)Not determined22760206084013384Mouse
14746979Manh51_mmandible shape 51 (mouse)22896112962961129Mouse
14746997Mancz2_mmandible centroid size 2 (mouse)22896112962961129Mouse
4141854T2dm2sa_mtype 2 diabetes mellitus 2 in SMXA RI mice (mouse)Not determined229307947148374934Mouse
12904008Cfq6_mconditioned fear QTL 6 (mouse)23120303544508204Mouse
4141236Hbnr5_mHeligmosomoides bakeri nematode resistance 5 (mouse)Not determined31214567105143570Mouse
13464253Ifvrq1_minfluenza virus resistance QTL 1 (mouse)23303449252034492Mouse

Markers in Region
Rabepk  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map2BUniSTS
cM Map2 UniSTS
AV073337  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38234,778,703 - 34,778,787UniSTSGRCm38
MGSCv37234,634,223 - 34,634,307UniSTSGRCm37
Celera234,479,180 - 34,479,264UniSTS
Cytogenetic Map2BUniSTS
Whitehead/MRC_RH2663.09UniSTS
C87311  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38234,779,232 - 34,779,432UniSTSGRCm38
MGSCv37234,634,752 - 34,634,952UniSTSGRCm37
Celera234,479,709 - 34,479,909UniSTS
Cytogenetic Map2BUniSTS
Whitehead/MRC_RH2660.06UniSTS


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001374669 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_145522 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006497984 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006497986 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006497987 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006497989 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017317453 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030250015 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030250019 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030250020 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030250025 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036160906 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036160907 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AK018405 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK035343 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK153022 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK179101 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK206590 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL929106 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC019800 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466542 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSMUST00000047963   ⟹   ENSMUSP00000037746
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl234,669,440 - 34,685,317 (-)Ensembl
GRCm38.p6 Ensembl234,779,428 - 34,795,305 (-)Ensembl
RefSeq Acc Id: ENSMUST00000113086   ⟹   ENSMUSP00000108709
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl234,669,229 - 34,689,630 (-)Ensembl
GRCm38.p6 Ensembl234,779,217 - 34,799,618 (-)Ensembl
RefSeq Acc Id: ENSMUST00000118108   ⟹   ENSMUSP00000113099
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl234,669,249 - 34,689,740 (-)Ensembl
GRCm38.p6 Ensembl234,779,237 - 34,799,728 (-)Ensembl
RefSeq Acc Id: ENSMUST00000140663   ⟹   ENSMUSP00000122119
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl234,675,043 - 34,689,913 (-)Ensembl
GRCm38.p6 Ensembl234,785,031 - 34,799,901 (-)Ensembl
RefSeq Acc Id: ENSMUST00000141099   ⟹   ENSMUSP00000120887
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl234,674,651 - 34,689,876 (-)Ensembl
GRCm38.p6 Ensembl234,784,639 - 34,799,864 (-)Ensembl
RefSeq Acc Id: ENSMUST00000144113
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl234,675,515 - 34,689,766 (-)Ensembl
GRCm38.p6 Ensembl234,785,503 - 34,799,754 (-)Ensembl
RefSeq Acc Id: ENSMUST00000145903   ⟹   ENSMUSP00000122360
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl234,667,568 - 34,689,924 (-)Ensembl
GRCm38.p6 Ensembl234,777,556 - 34,799,912 (-)Ensembl
RefSeq Acc Id: NM_001374669   ⟹   NP_001361598
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39234,669,229 - 34,689,803 (-)NCBI
GRCm38234,779,217 - 34,799,791 (-)NCBI
Sequence:
RefSeq Acc Id: NM_145522   ⟹   NP_663497
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39234,668,678 - 34,689,924 (-)NCBI
GRCm38234,778,666 - 34,799,912 (-)NCBI
MGSCv37234,634,186 - 34,655,311 (-)RGD
Celera234,479,143 - 34,500,444 (-)ENTREZGENE
cM Map2 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006497984   ⟹   XP_006498047
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39234,669,229 - 34,690,200 (-)NCBI
GRCm38234,777,892 - 34,800,196 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006497986   ⟹   XP_006498049
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39234,669,229 - 34,690,200 (-)NCBI
GRCm38234,777,892 - 34,800,196 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006497987   ⟹   XP_006498050
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39234,668,660 - 34,689,776 (-)NCBI
GRCm38234,777,892 - 34,799,764 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006497989   ⟹   XP_006498052
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39234,669,229 - 34,690,200 (-)NCBI
GRCm38234,777,892 - 34,800,196 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017317453   ⟹   XP_017172942
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39234,662,946 - 34,690,200 (-)NCBI
GRCm38234,774,609 - 34,800,196 (-)NCBI
Sequence:
RefSeq Acc Id: XM_030250015   ⟹   XP_030105875
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39234,668,660 - 34,689,785 (-)NCBI
GRCm38234,777,892 - 34,799,754 (-)NCBI
Sequence:
RefSeq Acc Id: XM_030250019   ⟹   XP_030105879
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39234,669,229 - 34,690,200 (-)NCBI
GRCm38234,777,892 - 34,800,196 (-)NCBI
Sequence:
RefSeq Acc Id: XM_030250020   ⟹   XP_030105880
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39234,668,660 - 34,689,776 (-)NCBI
GRCm38234,777,892 - 34,799,752 (-)NCBI
Sequence:
RefSeq Acc Id: XM_030250025   ⟹   XP_030105885
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39234,669,229 - 34,690,200 (-)NCBI
GRCm38234,777,892 - 34,800,196 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036160906   ⟹   XP_036016799
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39234,662,946 - 34,690,200 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036160907   ⟹   XP_036016800
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39234,662,946 - 34,689,785 (-)NCBI
Sequence:
RefSeq Acc Id: NP_663497   ⟸   NM_145522
- Peptide Label: isoform 1
- UniProtKB: Q8BZG7 (UniProtKB/Swiss-Prot),   Q8VCH5 (UniProtKB/Swiss-Prot),   A2AUF7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006498047   ⟸   XM_006497984
- Peptide Label: isoform X1
- UniProtKB: A2AUF7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006498049   ⟸   XM_006497986
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_006498052   ⟸   XM_006497989
- Peptide Label: isoform X9
- Sequence:
RefSeq Acc Id: XP_006498050   ⟸   XM_006497987
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_017172942   ⟸   XM_017317453
- Peptide Label: isoform X5
- Sequence:
RefSeq Acc Id: XP_030105885   ⟸   XM_030250025
- Peptide Label: isoform X8
RefSeq Acc Id: XP_030105879   ⟸   XM_030250019
- Peptide Label: isoform X4
RefSeq Acc Id: XP_030105875   ⟸   XM_030250015
- Peptide Label: isoform X2
- UniProtKB: A2AUF7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_030105880   ⟸   XM_030250020
- Peptide Label: isoform X4
RefSeq Acc Id: NP_001361598   ⟸   NM_001374669
- Peptide Label: isoform 2
- UniProtKB: B0R0S4 (UniProtKB/TrEMBL),   A2AUF7 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSMUSP00000113099   ⟸   ENSMUST00000118108
RefSeq Acc Id: ENSMUSP00000108709   ⟸   ENSMUST00000113086
RefSeq Acc Id: ENSMUSP00000037746   ⟸   ENSMUST00000047963
RefSeq Acc Id: ENSMUSP00000122360   ⟸   ENSMUST00000145903
RefSeq Acc Id: ENSMUSP00000122119   ⟸   ENSMUST00000140663
RefSeq Acc Id: ENSMUSP00000120887   ⟸   ENSMUST00000141099
RefSeq Acc Id: XP_036016799   ⟸   XM_036160906
- Peptide Label: isoform X6
RefSeq Acc Id: XP_036016800   ⟸   XM_036160907
- Peptide Label: isoform X7

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q8VCH5-F1-model_v2 AlphaFold Q8VCH5 1-380 view protein structure

Promoters
RGD ID:6832240
Promoter ID:MM_KWN:28841
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:ENSMUST00000113086,   ENSMUST00000113088,   ENSMUST00000118108,   OTTMUST00000028502,   OTTMUST00000028506,   OTTMUST00000028509,   OTTMUST00000077927
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36234,655,191 - 34,655,691 (-)MPROMDB
RGD ID:6877094
Promoter ID:EPDNEW_M1998
Type:initiation region
Name:Rabepk_1
Description:Mus musculus Rab9 effector protein with kelch motifs , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38234,799,841 - 34,799,901EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:2139530 AgrOrtholog
Ensembl Genes ENSMUSG00000070953 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000047963.7 UniProtKB/TrEMBL
  ENSMUST00000113086.9 UniProtKB/TrEMBL
  ENSMUST00000118108 ENTREZGENE
  ENSMUST00000118108.2 UniProtKB/TrEMBL
  ENSMUST00000140663.8 UniProtKB/TrEMBL
  ENSMUST00000141099.2 UniProtKB/TrEMBL
  ENSMUST00000145903 ENTREZGENE
  ENSMUST00000145903.8 UniProtKB/Swiss-Prot
Gene3D-CATH 2.120.10.80 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro Kelch-typ_b-propeller UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Kelch_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:227746 UniProtKB/Swiss-Prot
MGD MGI:2139530 ENTREZGENE
NCBI Gene 227746 ENTREZGENE
PANTHER RAB9 EFFECTOR PROTEIN WITH KELCH MOTIFS UniProtKB/Swiss-Prot
  RAB9 EFFECTOR PROTEIN WITH KELCH MOTIFS UniProtKB/Swiss-Prot
  RAB9 EFFECTOR PROTEIN WITH KELCH MOTIFS UniProtKB/TrEMBL
  RAB9 EFFECTOR PROTEIN WITH KELCH MOTIFS UniProtKB/TrEMBL
Pfam Kelch_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Kelch_3 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Kelch_4 UniProtKB/TrEMBL
  Kelch_5 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Rabepk PhenoGen
Superfamily-SCOP SSF117281 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A2AUF7 ENTREZGENE, UniProtKB/TrEMBL
  B0R0S4 ENTREZGENE, UniProtKB/TrEMBL
  D6RGR6_MOUSE UniProtKB/TrEMBL
  D6RHN6_MOUSE UniProtKB/TrEMBL
  G8JL41_MOUSE UniProtKB/TrEMBL
  Q3U6R8_MOUSE UniProtKB/TrEMBL
  Q8BZG7 ENTREZGENE
  Q8VCH5 ENTREZGENE, UniProtKB/Swiss-Prot
UniProt Secondary Q8BZG7 UniProtKB/Swiss-Prot