Olfr43 (olfactory receptor 43) - Rat Genome Database
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Gene: Olfr43 (olfactory receptor 43) Mus musculus
Analyze
Symbol: Olfr43
Name: olfactory receptor 43
RGD ID: 1549992
MGI Page MGI
Description: Orthologous to several human genes including OR1A1 (olfactory receptor family 1 subfamily A member 1).
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: GA_x6K02T2P1NL-4359899-4358958; IA7; MGC129217; MGC129218; MOR125; MOR125-1; MOR125-5_p; olfactory receptor 403; olfactory receptor MOR125-1; Olfr403; RP23-20M18.3
RGD Orthologs
Human
Rat
Dog
Pig
Green Monkey
Alliance Genes
More Info more info ...
Latest Assembly: GRCm38 - Mouse Genome Assembly GRCm38
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391174,097,024 - 74,098,115 (-)NCBIGRCm39mm39
GRCm39 Ensembl1174,096,490 - 74,102,205 (-)Ensembl
GRCm381174,206,198 - 74,207,289 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1174,205,664 - 74,211,379 (-)EnsemblGRCm38mm10GRCm38
MGSCv371174,019,700 - 74,020,791 (-)NCBIGRCm37mm9NCBIm37
MGSCv361174,022,468 - 74,023,409 (-)NCBImm8
Celera1181,735,512 - 81,736,603 (-)NCBICelera
Cytogenetic Map11B5NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

Additional References at PubMed
PMID:9875846   PMID:11170746   PMID:11802173   PMID:11875048   PMID:12477932   PMID:14611657   PMID:21873635   PMID:30639733  


Genomics

Comparative Map Data
Olfr43
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391174,097,024 - 74,098,115 (-)NCBIGRCm39mm39
GRCm39 Ensembl1174,096,490 - 74,102,205 (-)Ensembl
GRCm381174,206,198 - 74,207,289 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1174,205,664 - 74,211,379 (-)EnsemblGRCm38mm10GRCm38
MGSCv371174,019,700 - 74,020,791 (-)NCBIGRCm37mm9NCBIm37
MGSCv361174,022,468 - 74,023,409 (-)NCBImm8
Celera1181,735,512 - 81,736,603 (-)NCBICelera
Cytogenetic Map11B5NCBI
OR1A1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl173,207,539 - 3,218,896 (+)EnsemblGRCh38hg38GRCh38
GRCh38173,207,667 - 3,218,896 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh37173,110,961 - 3,122,190 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36173,065,665 - 3,066,594 (+)NCBINCBI36hg18NCBI36
Build 34173,065,664 - 3,066,594NCBI
Celera173,136,984 - 3,137,913 (+)NCBI
Cytogenetic Map17p13.3NCBI
HuRef173,011,170 - 3,012,099 (+)NCBIHuRef
CHM1_1173,127,802 - 3,128,731 (+)NCBICHM1_1
Olr1513
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21059,058,941 - 59,059,879 (+)NCBI
Rnor_6.0 Ensembl1061,033,113 - 61,034,051 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.01061,033,113 - 61,034,051 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01060,765,095 - 60,766,033 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41061,481,889 - 61,482,827 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11061,495,511 - 61,496,450 (+)NCBI
Celera1058,100,061 - 58,100,999 (+)NCBICelera
Cytogenetic Map10q24NCBI
OR1A1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1 Ensembl947,120,640 - 47,121,569 (-)EnsemblCanFam3.1canFam3CanFam3.1
CanFam3.1947,120,640 - 47,121,569 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
LOC110256089
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.11249,342,371 - 49,344,267 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
LOC103242143
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1162,663,337 - 2,670,311 (-)NCBI
ChlSab1.1 Ensembl162,668,273 - 2,669,199 (-)Ensembl

Position Markers
UniSTS:485253  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381174,195,505 - 74,196,446UniSTSGRCm38
MGSCv371174,009,007 - 74,009,948UniSTSGRCm37
Celera1181,724,817 - 81,725,758UniSTS
Cytogenetic Map11B4UniSTS
Cytogenetic Map11B5UniSTS
UniSTS:494341  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381174,206,198 - 74,207,289UniSTSGRCm38
MGSCv371174,019,700 - 74,020,791UniSTSGRCm37
Celera1181,735,512 - 81,736,603UniSTS
Cytogenetic Map11B4UniSTS


QTLs in Region (GRCm38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
13208559Wght10_mweight 10 (mouse)11400000089000000Mouse
13208558Lgth12_mbody length 12 (mouse)11400000095000000Mouse
1300905Scc6_mcolon tumor susceptibility 6 (mouse)Not determined11693027789128908Mouse
1357859Lvrq7_mliver weight QTL 7 (mouse)Not determined1112318637118131898Mouse
39128214Lwq20_mliver weight QTL 20 (mouse)1112318637118131898Mouse
4141894Nidd6k_mNidd6 on KK-A (mouse)Not determined1917420497007000Mouse
10412246Dfs2_mdental fluorosis suseptibility 2 (mouse)Not determined112185736495990405Mouse
13208569Bmiq10_mbody mass index QTL 10 (mouse)113600000085000000Mouse
1301328Mol4_mmodifier of LPS-response 4 (mouse)Not determined113639175083590530Mouse
11532698Sluc36a_msusceptibility to lung cancer 36a (mouse)114236579176365904Mouse
11532699Sluc36b_msusceptibility to lung cancer 36b (mouse)114236579176365904Mouse
4142300Ctrq3_mC. trachomatis resistance QTL 3 (mouse)Not determined114473921176963931Mouse
4141367Inf1_macute ozone induced inflammation (mouse)Not determined44739211113167183Mouse
4141000Nidd3_mnon-insulin-dependent diabetes mellitus 3 (mouse)Not determined4515120179151308Mouse
1302021Nidd1n_mnon-insulin-dependent diabetes mellitus 1 in NSY (mouse)Not determined114527504680087498Mouse
1357878Mastr_mmodifier of astrocytoma (mouse)Not determined114581775489927907Mouse
1300765Bbaa4_mB.burgdorferi-associated arthritis 4 (mouse)Not determined114629434180294436Mouse
1301988Bmd11_mbone mineral density 11 (mouse)Not determined114642858180428696Mouse
1301830Ssta4_msusceptibility to Salmonella typhimurium antigens 4 (mouse)Not determined115018736584187585Mouse
13524840Ppiq9a_mprepulse inhibition QTL 9a (mouse)115260355986603559Mouse
1300774Pgia7_mproteoglycan induced arthritis 7 (mouse)Not determined115349976287499911Mouse
4141830Pregq1_mpregnancy QTL 1 (mouse)Not determined115423592683842826Mouse
4142121Tmc1m2_mTmc1 modifier 2 (mouse)Not determined1156973201114267131Mouse
1300664Etohcta9_methanol conditioned taste aversion 9 (mouse)Not determined115786383491863932Mouse
10053682Eae45_mexperimental allergic encephalomyelitis susceptibility 45 (mouse)Not determined115859972974863932Mouse
1300924Ity2_mimmunity to S. typhimurium 2 (mouse)Not determined15861720487804412Mouse
4141982Skts-fp2_mskin tumor susceptibility in FVB and PWK 2 (mouse)Not determined5882844085175703Mouse
1301987Pid3_mprior incubation determinant 3 (mouse)Not determined116179599488808902Mouse
1301319Dautb4_mdopamine uptake transporter binding 4 (mouse)Not determined116226517996265327Mouse
27226730Tibmd1_mtibia midshaft diameter 1, 5 week (mouse)1162700000109500000Mouse
1301999Lmr15_mleishmaniasis resistance 15 (mouse)Not determined116342858181939647Mouse
10044004Stzid3_mstreptozotocin induced diabetes susceptibility 3 (mouse)Not determined116342858194173092Mouse
11039501Ltpr6a_mLeishmania tropica response 6a (mouse)116493951098939647Mouse
11039502Ltpr6b_mLeishmania tropica response 6b (mouse)116493951098939647Mouse
11039515Ltpr6_mLeishmania tropica response 6 (mouse)116493951098939647Mouse
1301546Pcir2_mperiosteal circumference 2 (mouse)Not determined1166842594100842826Mouse
1357766Si5lq6_mserum IGFBP-5 level QTL 6 (mouse)Not determined1166842594100842826Mouse
4141012Femwf6_mfemur work to failure 6 (mouse)Not determined66842594100842826Mouse
1301833Tbbmd5_mtotal body bone mineral density 5 (mouse)Not determined1166842594100842826Mouse
1300784Prdt3_mprion disease incubation time 3 (mouse)Not determined1166842594100842826Mouse
1300628Lgth6_mbody length 6 (mouse)Not determined1166842594100842826Mouse
4142316Ity2b_mimmunity to S. typhimurium 2b (mouse)Not determined116718736579923086Mouse
27226783Tibl5_mtibia length 5, 5 week (mouse)1168300000102000000Mouse
1300651Pcyts3_mplasmacytoma susceptibility 3 (mouse)Not determined1170800372104800540Mouse
1301681Sle13_msystematic lupus erythematosus susceptibility 13 (mouse)Not determined1170800372104800540Mouse
1558812Rafar_mretinoic acid induced forelimb autopod reduction (mouse)Not determined1170800372104800540Mouse
4141339Nilac2_mnicotine induced locomotor activity 2 (mouse)Not determined1170800372104800540Mouse
1301404Sbmd4_mspinal bone mineral density 4 (mouse)Not determined1172128823106128908Mouse
1301078Alcp2_malcohol preference locus 2 (mouse)Not determined117231897084840636Mouse
1301310Tmevd5_mTheiler's murine encephalomyelitis virus induced demyelinating disease susceptibility 5 (mouse)Not determined1172835299106835463Mouse
4142348Pstc2_mperiosteal circumference 2 (mouse)Not determined1172927789106927907Mouse
10043866Adip19_madiposity 19 (mouse)Not determined1172927789106927907Mouse
12903994Opfaq3_mopen field activity QTL 3 (mouse)117384671582178599Mouse

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:180
Count of miRNA genes:174
Interacting mature miRNAs:179
Transcripts:ENSMUST00000078936
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000078936   ⟹   ENSMUSP00000077966
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1174,206,198 - 74,207,289 (-)Ensembl
RefSeq Acc Id: ENSMUST00000205664   ⟹   ENSMUSP00000145822
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1174,205,664 - 74,211,330 (-)Ensembl
RefSeq Acc Id: ENSMUST00000206743   ⟹   ENSMUSP00000146125
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1174,206,893 - 74,211,327 (-)Ensembl
RefSeq Acc Id: ENSMUST00000215550   ⟹   ENSMUSP00000150560
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1174,205,664 - 74,211,379 (-)Ensembl
RefSeq Acc Id: NM_146711   ⟹   NP_666922
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391174,097,024 - 74,098,115 (-)NCBI
GRCm381174,206,198 - 74,207,289 (-)ENTREZGENE
MGSCv371174,019,700 - 74,020,791 (-)RGD
Celera1181,735,512 - 81,736,603 (-)RGD
cM Map11 ENTREZGENE
Sequence:
Protein Sequences
Protein RefSeqs NP_666922 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAG42798 (Get FASTA)   NCBI Sequence Viewer  
  AAI25465 (Get FASTA)   NCBI Sequence Viewer  
  AAI25469 (Get FASTA)   NCBI Sequence Viewer  
  AAL61047 (Get FASTA)   NCBI Sequence Viewer  
  AAP70929 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: NP_666922   ⟸   NM_146711
- UniProtKB: Q7TRX1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSMUSP00000146125   ⟸   ENSMUST00000206743
RefSeq Acc Id: ENSMUSP00000145822   ⟸   ENSMUST00000205664
RefSeq Acc Id: ENSMUSP00000077966   ⟸   ENSMUST00000078936
RefSeq Acc Id: ENSMUSP00000150560   ⟸   ENSMUST00000215550
Protein Domains
G_PROTEIN_RECEP_F1_2


Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1333770 AgrOrtholog
Ensembl Genes ENSMUSG00000070377 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSMUSP00000077966 ENTREZGENE, UniProtKB/TrEMBL
  ENSMUSP00000145822 UniProtKB/TrEMBL
  ENSMUSP00000146125 UniProtKB/TrEMBL
  ENSMUSP00000150560 UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000078936 ENTREZGENE, UniProtKB/TrEMBL
  ENSMUST00000205664 UniProtKB/TrEMBL
  ENSMUST00000206743 UniProtKB/TrEMBL
  ENSMUST00000215550 UniProtKB/TrEMBL
InterPro 7TM_GPCR_Rhodpsn UniProtKB/TrEMBL
  GPCR_Rhodpsn_supfam UniProtKB/TrEMBL
  Olfact_rcpt UniProtKB/TrEMBL
KEGG Report mmu:258706 UniProtKB/TrEMBL
MGD MGI:1333770 ENTREZGENE
NCBI Gene 258706 ENTREZGENE
Pfam 7tm_4 UniProtKB/TrEMBL
PhenoGen Olfr43 PhenoGen
PRINTS GPCRRHODOPSN UniProtKB/TrEMBL
  OLFACTORYR UniProtKB/TrEMBL
PROSITE G_PROTEIN_RECEP_F1_2 UniProtKB/TrEMBL
UniProt A0A0U1RPU2_MOUSE UniProtKB/TrEMBL
  Q7TRX1 ENTREZGENE, UniProtKB/TrEMBL
UniProt Secondary A0A0U1RP44 UniProtKB/TrEMBL