Zkscan17 (zinc finger with KRAB and SCAN domains 17) - Rat Genome Database
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Gene: Zkscan17 (zinc finger with KRAB and SCAN domains 17) Mus musculus
Analyze
Symbol: Zkscan17
Name: zinc finger with KRAB and SCAN domains 17
RGD ID: 1549986
MGI Page MGI
Description: Is expressed in several structures, including early conceptus; genitourinary system; liver; lung; and spleen. Orthologous to human ZNF496 (zinc finger protein 496); INTERACTS WITH 1,2-dichloroethane; 1,2-dimethylhydrazine; 2,2',4,4',5,5'-hexachlorobiphenyl.
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: BC040205; D130067D09; MGC36538; Ni; Nizp1; NSD1-interacting zinc finger protein 1; RP23-210M6.6; Zfp49; Zfp496; zinc finger protein 496; zinc finger protein with KRAB and SCAN domains 17; Znf496
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm38 - Mouse Genome Assembly GRCm38
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391159,376,346 - 59,397,466 (-)NCBIGRCm39mm39
GRCm39 Ensembl1159,376,346 - 59,417,577 (-)Ensembl
GRCm381159,485,520 - 59,506,640 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1159,485,520 - 59,526,751 (-)EnsemblGRCm38mm10GRCm38
MGSCv371159,299,023 - 59,320,142 (-)NCBIGRCm37mm9NCBIm37
MGSCv361159,301,757 - 59,322,106 (-)NCBImm8
MGSCv361160,021,662 - 60,042,011 (-)NCBImm8
Cytogenetic Map11B1.3NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
References

Additional References at PubMed
PMID:8889548   PMID:10349636   PMID:10922068   PMID:11042159   PMID:11076861   PMID:11217851   PMID:11544199   PMID:14610273   PMID:14681479   PMID:15169884   PMID:15618518   PMID:15782199  
PMID:16141072   PMID:16141073   PMID:17521633   PMID:18287559   PMID:18799693   PMID:20412781   PMID:20538088   PMID:21677750   PMID:21873635   PMID:27626380   PMID:29111324  


Genomics

Comparative Map Data
Zkscan17
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391159,376,346 - 59,397,466 (-)NCBIGRCm39mm39
GRCm39 Ensembl1159,376,346 - 59,417,577 (-)Ensembl
GRCm381159,485,520 - 59,506,640 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1159,485,520 - 59,526,751 (-)EnsemblGRCm38mm10GRCm38
MGSCv371159,299,023 - 59,320,142 (-)NCBIGRCm37mm9NCBIm37
MGSCv361159,301,757 - 59,322,106 (-)NCBImm8
MGSCv361160,021,662 - 60,042,011 (-)NCBImm8
Cytogenetic Map11B1.3NCBI
ZNF496
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl1247,297,412 - 247,331,846 (-)EnsemblGRCh38hg38GRCh38
GRCh381247,297,415 - 247,331,867 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh371247,460,717 - 247,495,169 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361245,530,245 - 245,561,668 (-)NCBINCBI36hg18NCBI36
Build 341243,789,663 - 243,821,086NCBI
Celera1220,759,980 - 220,791,668 (-)NCBI
Cytogenetic Map1q44NCBI
HuRef1217,858,464 - 217,889,889 (-)NCBIHuRef
CHM1_11248,735,859 - 248,767,200 (-)NCBICHM1_1
Zfp496
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21044,268,923 - 44,287,795 (-)NCBI
Rnor_6.0 Ensembl1045,833,264 - 45,851,984 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.01045,833,259 - 45,852,130 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01045,589,179 - 45,608,737 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41045,789,046 - 45,807,920 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11045,804,204 - 45,821,075 (-)NCBI
Celera1043,530,550 - 43,549,391 (-)NCBICelera
Cytogenetic Map10q22NCBI
Znf496
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955581541,088 - 558,907 (-)EnsemblChiLan1.0
ChiLan1.0NW_004955581543,526 - 559,514 (-)NCBIChiLan1.0ChiLan1.0
ZNF496
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11228,384,527 - 228,422,404 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1228,384,527 - 228,422,390 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01222,929,917 - 222,965,629 (-)NCBIMhudiblu_PPA_v0panPan3
ZNF496
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1 Ensembl8171,476 - 196,647 (-)EnsemblCanFam3.1canFam3CanFam3.1
CanFam3.18169,247 - 196,996 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Znf496
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
SpeTri2.0NW_004936864539,638 - 564,292 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ZNF496
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl257,053,652 - 57,097,828 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1257,053,417 - 57,097,831 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2257,950,180 - 58,026,138 (+)NCBISscrofa10.2Sscrofa10.2susScr3
ZNF496
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12584,316,335 - 84,346,604 (-)NCBI
ChlSab1.1 Ensembl2584,314,623 - 84,346,550 (-)Ensembl
Znf496
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_004624937609,185 - 626,023 (+)NCBI

Position Markers
AW551251  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381159,485,944 - 59,486,047UniSTSGRCm38
MGSCv371159,299,446 - 59,299,549UniSTSGRCm37
Cytogenetic Map11B1.3UniSTS
Whitehead/MRC_RH11781.46UniSTS


QTLs in Region (GRCm38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
27226798Scvln18_msacral vertebrae length 2, 16 week (mouse)11330000060800000Mouse
26884446Sklq10_mskull length QTL 10, 10 week (mouse)11330000063000000Mouse
26884453Sklq16_mskull length QTL 16, 16 week (mouse)11330000072800000Mouse
13208559Wght10_mweight 10 (mouse)11400000089000000Mouse
13208558Lgth12_mbody length 12 (mouse)11400000095000000Mouse
1300905Scc6_mcolon tumor susceptibility 6 (mouse)Not determined11693027789128908Mouse
27226738Metcl11_mmetatarsal-calcaneal length 11, 10 week (mouse)11890000061500000Mouse
26884401Huml4_mhumerus length 4, 10 week (mouse)111160000068600000Mouse
27226762Feml21_mfemur length 21, 16 week (mouse)111180000066100000Mouse
4141966Tailq1_mtail length QTL 1 (mouse)Not determined1231863768609504Mouse
1357851Scfq3_msubcutaneous fat pad weight QTL 3 (mouse)Not determined111231863768609504Mouse
1357437Epfq4_mepididymal fat pad weight QTL 4 (mouse)Not determined111231863768609504Mouse
4141127W3q4_mweight 3 weeks QTL 4 (mouse)Not determined1231863768609504Mouse
4142216Lgq1_mlate growth QTL 1 (mouse)Not determined1231863768609504Mouse
4142308W6q3_mweight 6 weeks QTL 3 (mouse)Not determined111231863768609504Mouse
4141582Lgaq1_mlate growth adjusted QTL 1 (mouse)Not determined1231863768609504Mouse
4142109W10q2_mweight 10 weeks QTL 2 (mouse)Not determined1231863768609504Mouse
4141470Egq4_mearly growth QTL 4 (mouse)Not determined1231863768609504Mouse
1357640Orq2_movulation rate QTL 2 (mouse)Not determined111231863768609504Mouse
1357720Kidpq1_mkidney weight percentage QTL 1 (mouse)Not determined111231863768609504Mouse
1559002Lmrq4_mLeishmania major resistance QTL 4 (mouse)Not determined111231863769794121Mouse
1357859Lvrq7_mliver weight QTL 7 (mouse)Not determined1112318637118131898Mouse
39128214Lwq20_mliver weight QTL 20 (mouse)1112318637118131898Mouse
1558945Orgwq8_morgan weight QTL 8 (mouse)Not determined111710617567187585Mouse
10053687Eae6_msusceptibility to experimental allergic encephalomyelitis 6 (mouse)Not determined111783196668609504Mouse
4141894Nidd6k_mNidd6 on KK-A (mouse)Not determined1917420497007000Mouse
10412246Dfs2_mdental fluorosis suseptibility 2 (mouse)Not determined112185736495990405Mouse
10044006Hbnr13_mHeligmosomoides bakeri nematode resistance 13 (mouse)Not determined112588179959881914Mouse
1357844Si5lq5_mserum IGFBP-5 level QTL 5 (mouse)Not determined112827504662275149Mouse
13524848Ppiq7_mprepulse inhibition QTL 7 (mouse)112867832062678320Mouse
1301426Desp2_mdespair 2 (mouse)Not determined112881775462817873Mouse
11522752Cocia18_mcocaine-induced activity, QTL 18 (mouse)113111738265117382Mouse
11059563Lmr31_mleishmaniasis resistance 31 (mouse)113220975066209867Mouse
1357782Char8_mP. chabaudi malaria resistance QTL 8 (mouse)Not determined113568778969794161Mouse
13208569Bmiq10_mbody mass index QTL 10 (mouse)113600000085000000Mouse
1301328Mol4_mmodifier of LPS-response 4 (mouse)Not determined113639175083590530Mouse
1301788Lbw8_mlupus NZB x NZW 8 (mouse)Not determined113661246070618665Mouse
1301896Tria1_mT-cell receptor induced activation 1 (mouse)Not determined113672273870723028Mouse
4141853Skmw17_mskeletal muscle weight 17 (mouse)Not determined113719011571190238Mouse
4142475Ity2a_mimmunity to S. typhimurium 2a (mouse)Not determined113787775360511890Mouse
10766457Nwa3_mNew Zealand White autoimmunity 3 (mouse)113812528972125383Mouse
11532698Sluc36a_msusceptibility to lung cancer 36a (mouse)114236579176365904Mouse
11532699Sluc36b_msusceptibility to lung cancer 36b (mouse)114236579176365904Mouse
4142300Ctrq3_mC. trachomatis resistance QTL 3 (mouse)Not determined114473921176963931Mouse
4141367Inf1_macute ozone induced inflammation (mouse)Not determined44739211113167183Mouse
4141000Nidd3_mnon-insulin-dependent diabetes mellitus 3 (mouse)Not determined4515120179151308Mouse
1302021Nidd1n_mnon-insulin-dependent diabetes mellitus 1 in NSY (mouse)Not determined114527504680087498Mouse
1357878Mastr_mmodifier of astrocytoma (mouse)Not determined114581775489927907Mouse
1300765Bbaa4_mB.burgdorferi-associated arthritis 4 (mouse)Not determined114629434180294436Mouse
1301988Bmd11_mbone mineral density 11 (mouse)Not determined114642858180428696Mouse
1301830Ssta4_msusceptibility to Salmonella typhimurium antigens 4 (mouse)Not determined115018736584187585Mouse
13524840Ppiq9a_mprepulse inhibition QTL 9a (mouse)115260355986603559Mouse
1300774Pgia7_mproteoglycan induced arthritis 7 (mouse)Not determined115349976287499911Mouse
4141084Spqq1_msperm quality QTL 1 (mouse)Not determined5417484463428696Mouse
1302186Blmpf2_mbleomycin-induced pulmonary fibrosis 2 (mouse)Not determined115417484467187585Mouse
4142148Ckdbp2_mchronic kidney disease blood pressure locus 2 (mouse)Not determined115419011565213015Mouse
4141830Pregq1_mpregnancy QTL 1 (mouse)Not determined115423592683842826Mouse
4141875Etax9_methanol induced ataxia 9 (mouse)Not determined5539415972319101Mouse
4142121Tmc1m2_mTmc1 modifier 2 (mouse)Not determined1156973201114267131Mouse
1300664Etohcta9_methanol conditioned taste aversion 9 (mouse)Not determined115786383491863932Mouse
10053682Eae45_mexperimental allergic encephalomyelitis susceptibility 45 (mouse)Not determined115859972974863932Mouse
1300924Ity2_mimmunity to S. typhimurium 2 (mouse)Not determined15861720487804412Mouse
4141982Skts-fp2_mskin tumor susceptibility in FVB and PWK 2 (mouse)Not determined5882844085175703Mouse
11532697Sluc36_msusceptibility to lung cancer 36 (mouse)115936579169591873Mouse

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:1901
Count of miRNA genes:574
Interacting mature miRNAs:683
Transcripts:ENSMUST00000013262, ENSMUST00000101150, ENSMUST00000129941, ENSMUST00000134522, ENSMUST00000139093, ENSMUST00000139707
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001130529 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001291014 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_172941 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006533384 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006533385 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006533386 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030246030 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030246031 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030246032 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030246033 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036156713 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AK051711 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK139346 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK155196 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK155490 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK157002 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK158448 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK170582 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK170924 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK170989 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK171190 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK177146 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK178512 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK178776 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK179258 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK180193 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK182740 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK183250 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK184169 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK186703 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK190897 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK191528 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK191770 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK191778 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK199466 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK200819 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK209254 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK210528 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK210730 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK211459 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK218924 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK219529 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL592522 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY302242 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC040205 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BE988762 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BY753203 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CB528232 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CN530086 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CR519620 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000013262   ⟹   ENSMUSP00000013262
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1159,485,520 - 59,506,644 (-)Ensembl
RefSeq Acc Id: ENSMUST00000101150   ⟹   ENSMUSP00000098709
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1159,485,520 - 59,506,644 (-)Ensembl
RefSeq Acc Id: ENSMUST00000129941
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1159,504,173 - 59,506,220 (-)Ensembl
RefSeq Acc Id: ENSMUST00000134522
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1159,499,544 - 59,506,220 (-)Ensembl
RefSeq Acc Id: ENSMUST00000139093
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1159,504,167 - 59,526,631 (-)Ensembl
RefSeq Acc Id: ENSMUST00000139707
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1159,525,452 - 59,526,751 (-)Ensembl
RefSeq Acc Id: NM_001130529   ⟹   NP_001124001
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391159,376,346 - 59,397,466 (-)NCBI
GRCm381159,485,520 - 59,506,640 (-)NCBI
MGSCv371159,299,023 - 59,320,142 (-)RGD
cM Map11 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_001291014   ⟹   NP_001277943
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391159,376,346 - 59,397,466 (-)NCBI
GRCm381159,485,520 - 59,506,640 (-)NCBI
Sequence:
RefSeq Acc Id: NM_172941   ⟹   NP_766529
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391159,376,346 - 59,397,466 (-)NCBI
GRCm381159,485,520 - 59,506,640 (-)NCBI
MGSCv371159,299,023 - 59,320,142 (-)RGD
cM Map11 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006533384   ⟹   XP_006533447
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391159,376,346 - 59,396,258 (-)NCBI
GRCm381159,485,520 - 59,505,429 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006533385   ⟹   XP_006533448
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391159,376,346 - 59,397,395 (-)NCBI
GRCm381159,485,520 - 59,506,569 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006533386   ⟹   XP_006533449
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391159,376,346 - 59,396,112 (-)NCBI
GRCm381159,485,520 - 59,505,293 (-)NCBI
Sequence:
RefSeq Acc Id: XM_030246030   ⟹   XP_030101890
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391159,376,346 - 59,397,082 (-)NCBI
GRCm381159,485,520 - 59,506,256 (-)NCBI
Sequence:
RefSeq Acc Id: XM_030246031   ⟹   XP_030101891
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391159,376,346 - 59,396,924 (-)NCBI
GRCm381159,485,520 - 59,506,098 (-)NCBI
Sequence:
RefSeq Acc Id: XM_030246032   ⟹   XP_030101892
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391159,376,346 - 59,397,400 (-)NCBI
GRCm381159,485,520 - 59,506,574 (-)NCBI
Sequence:
RefSeq Acc Id: XM_030246033   ⟹   XP_030101893
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391159,376,346 - 59,397,082 (-)NCBI
GRCm381159,485,520 - 59,506,256 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036156713   ⟹   XP_036012606
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391159,376,346 - 59,396,403 (-)NCBI
Reference Sequences
RefSeq Acc Id: NP_766529   ⟸   NM_172941
- Peptide Label: isoform 1
- UniProtKB: Q5SXI5 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001124001   ⟸   NM_001130529
- Peptide Label: isoform 2
- UniProtKB: Q5SXI5 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006533448   ⟸   XM_006533385
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_006533447   ⟸   XM_006533384
- Peptide Label: isoform X1
- UniProtKB: Q5SXI5 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006533449   ⟸   XM_006533386
- Peptide Label: isoform X4
- UniProtKB: Q5SXI5 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001277943   ⟸   NM_001291014
- Peptide Label: isoform 3
- UniProtKB: Q5SXI5 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_030101892   ⟸   XM_030246032
- Peptide Label: isoform X5
RefSeq Acc Id: XP_030101890   ⟸   XM_030246030
- Peptide Label: isoform X3
RefSeq Acc Id: XP_030101893   ⟸   XM_030246033
- Peptide Label: isoform X6
RefSeq Acc Id: XP_030101891   ⟸   XM_030246031
- Peptide Label: isoform X3
RefSeq Acc Id: ENSMUSP00000013262   ⟸   ENSMUST00000013262
RefSeq Acc Id: ENSMUSP00000098709   ⟸   ENSMUST00000101150
RefSeq Acc Id: XP_036012606   ⟸   XM_036156713
- Peptide Label: isoform X1
Protein Domains
KRAB   SCAN box

Promoters
RGD ID:6822511
Promoter ID:MM_KWN:7642
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day1,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   ES_Cell,   Kidney,   Lung,   MEF_B4
Transcripts:ENSMUST00000101150,   NM_001130529,   OTTMUST00000012827,   OTTMUST00000012830,   OTTMUST00000012831,   UC007JDZ.1,   UC007JED.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361159,319,671 - 59,321,042 (-)MPROMDB
RGD ID:8674818
Promoter ID:EPDNEW_M15440
Type:multiple initiation site
Name:Zkscan17_1
Description:Mus musculus zinc finger with KRAB and SCAN domains 17 , transcriptvariant 2, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M15441  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381159,506,221 - 59,506,281EPDNEW
RGD ID:8674826
Promoter ID:EPDNEW_M15441
Type:initiation region
Name:Zkscan17_2
Description:Mus musculus zinc finger with KRAB and SCAN domains 17 , transcriptvariant 2, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M15440  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381159,506,548 - 59,506,608EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:2679270 AgrOrtholog
Ensembl Genes ENSMUSG00000020472 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Protein ENSMUSP00000013262 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUSP00000098709 ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSMUST00000013262 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUST00000101150 ENTREZGENE, UniProtKB/Swiss-Prot
Gene3D-CATH 1.10.4020.10 UniProtKB/Swiss-Prot
InterPro KRAB UniProtKB/Swiss-Prot
  KRAB_dom_sf UniProtKB/Swiss-Prot
  SCAN_dom UniProtKB/Swiss-Prot
  SCAN_sf UniProtKB/Swiss-Prot
  Zfp496 UniProtKB/Swiss-Prot
  Znf_C2H2_sf UniProtKB/Swiss-Prot
  Znf_C2H2_type UniProtKB/Swiss-Prot
KEGG Report mmu:268417 UniProtKB/Swiss-Prot
MGD MGI:2679270 ENTREZGENE
NCBI Gene 268417 ENTREZGENE
PANTHER PTHR23226:SF180 UniProtKB/Swiss-Prot
Pfam KRAB UniProtKB/Swiss-Prot
  SCAN UniProtKB/Swiss-Prot
  zf-C2H2 UniProtKB/Swiss-Prot
PhenoGen Zkscan17 PhenoGen
PROSITE KRAB UniProtKB/Swiss-Prot
  SCAN_BOX UniProtKB/Swiss-Prot
  ZINC_FINGER_C2H2_1 UniProtKB/Swiss-Prot
  ZINC_FINGER_C2H2_2 UniProtKB/Swiss-Prot
SMART SCAN UniProtKB/Swiss-Prot
  ZnF_C2H2 UniProtKB/Swiss-Prot
Superfamily-SCOP SSF109640 UniProtKB/Swiss-Prot
  SSF57667 UniProtKB/Swiss-Prot
UniProt Q3TCR3_MOUSE UniProtKB/TrEMBL
  Q5SXI5 ENTREZGENE, UniProtKB/Swiss-Prot
UniProt Secondary Q3TC40 UniProtKB/Swiss-Prot
  Q3UTL1 UniProtKB/Swiss-Prot
  Q8BKK0 UniProtKB/Swiss-Prot
  Q8CGF9 UniProtKB/Swiss-Prot