Actg1 (actin, gamma, cytoplasmic 1) - Rat Genome Database

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Gene: Actg1 (actin, gamma, cytoplasmic 1) Mus musculus
Analyze
Symbol: Actg1
Name: actin, gamma, cytoplasmic 1
RGD ID: 1549970
MGI Page MGI
Description: A structural constituent of cytoskeleton. Involved in cellular response to interferon-gamma; sarcomere organization; and synaptic vesicle endocytosis. Localizes to several cellular components, including Schaffer collateral - CA1 synapse; basal body patch; and calyx of Held. Is expressed in central nervous system; early conceptus; oocyte; and retina. Human ortholog(s) of this gene implicated in Baraitser-Winter syndrome and autosomal dominant nonsyndromic deafness 20. Orthologous to human ACTG1 (actin gamma 1).
Type: protein-coding
RefSeq Status: REVIEWED
Also known as: Ac; Actg; actin, cytoplasmic 2; Actl; AL023024; beta-actin FE-3; E51; gamma-actin; MGC117491; MGC28612
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Related Pseudogenes: Gm11718   Gm12003   Gm12715   Gm13323   Gm14804   Gm16385   Gm17228   Gm18418   Gm18425   Gm2754   Gm47692   Gm4777   Gm48810   Gm5110   Gm5388   Gm6751   Gm7726   Gm8399   Gm8543  
Latest Assembly: GRCm38 - Mouse Genome Assembly GRCm38
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3911120,236,513 - 120,239,321 (-)NCBIGRCm39mm39
GRCm39 Ensembl11120,236,516 - 120,239,368 (-)Ensembl
GRCm3811120,345,687 - 120,348,495 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl11120,345,690 - 120,348,542 (-)EnsemblGRCm38mm10GRCm38
MGSCv3711120,207,004 - 120,209,798 (-)NCBIGRCm37mm9NCBIm37
MGSCv3611120,161,780 - 120,171,339 (-)NCBImm8
Celera11132,080,255 - 132,083,049 (-)NCBICelera
Cytogenetic Map11E2NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(+)-schisandrin B  (ISO)
1,2-dichloroethane  (EXP)
1,2-dimethylhydrazine  (EXP)
1-naphthyl isothiocyanate  (ISO)
17alpha-ethynylestradiol  (EXP,ISO)
17beta-estradiol  (ISO)
17beta-hydroxy-17-methylestra-4,9,11-trien-3-one  (ISO)
2,2',4,4'-Tetrabromodiphenyl ether  (EXP)
2,3',4,4',5-Pentachlorobiphenyl  (EXP)
2,3,7,8-tetrachlorodibenzodioxine  (ISO)
2,6-di-tert-butyl-4-methylphenol  (ISO)
2-hydroxypropanoic acid  (ISO)
2-methylcholine  (ISO)
3'-amino-3'-deoxy-N(6),N(6)-dimethyladenosine  (ISO)
3,3'-diindolylmethane  (ISO)
3,4-methylenedioxymethamphetamine  (EXP)
6-propyl-2-thiouracil  (ISO)
acrolein  (ISO)
acrylamide  (ISO)
aflatoxin B1  (ISO)
aldehydo-D-glucose  (ISO)
all-trans-retinoic acid  (EXP,ISO)
alpha-pinene  (ISO)
amphetamine  (ISO)
arsenous acid  (ISO)
benzo[a]pyrene  (ISO)
Benzo[k]fluoranthene  (EXP)
bexarotene  (ISO)
bis(2-ethylhexyl) phthalate  (EXP)
bisphenol A  (ISO)
bufalin  (ISO)
buspirone  (ISO)
carbon nanotube  (EXP)
cisplatin  (ISO)
clobetasol  (EXP)
clofibrate  (EXP)
copper atom  (ISO)
copper(0)  (ISO)
copper(II) sulfate  (ISO)
cyclosporin A  (ISO)
cytochalasin D  (ISO)
D-glucose  (ISO)
diallyl trisulfide  (ISO)
diarsenic trioxide  (ISO)
dibutyl phthalate  (EXP,ISO)
dichloroacetic acid  (EXP)
dicrotophos  (ISO)
dihydroartemisinin  (ISO)
dioxygen  (ISO)
dopamine  (ISO)
doxorubicin  (ISO)
elemental selenium  (ISO)
endosulfan  (ISO)
enzyme inhibitor  (ISO)
ethanol  (EXP,ISO)
fenoldopam  (ISO)
flutamide  (ISO)
folic acid  (EXP)
formaldehyde  (ISO)
fumonisin B1  (EXP)
genistein  (ISO)
gentamycin  (ISO)
glafenine  (ISO)
glucose  (ISO)
GW 4064  (EXP)
jaspamide  (ISO)
leflunomide  (ISO)
levofloxacin  (ISO)
mancozeb  (EXP)
metacetamol  (EXP)
methamphetamine  (ISO)
methotrexate  (EXP)
microcystin  (ISO)
N-methyl-4-phenylpyridinium  (EXP)
N-nitrosodiethylamine  (ISO)
N-nitrosomorpholine  (ISO)
ozone  (ISO)
paracetamol  (EXP,ISO)
pentachlorophenol  (EXP)
perfluorododecanoic acid  (ISO)
phenformin  (ISO)
phenobarbital  (ISO)
PhIP  (ISO)
pirinixic acid  (EXP)
potassium dichromate  (ISO)
pregnenolone 16alpha-carbonitrile  (ISO)
rac-lactic acid  (ISO)
rotenone  (ISO)
Salinomycin  (ISO)
selenium atom  (ISO)
sodium fluoride  (EXP)
tamoxifen  (EXP)
tetrachloromethane  (EXP,ISO)
thapsigargin  (ISO)
titanium dioxide  (EXP)
trimellitic anhydride  (EXP)
triphenyl phosphate  (ISO)
triptonide  (EXP)
troglitazone  (ISO)
trovafloxacin  (ISO)
tunicamycin  (ISO)
valproic acid  (EXP)
yohimbine  (ISO)
zinc sulfate  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

References

Additional References at PubMed
PMID:213279   PMID:1577857   PMID:2747639   PMID:3210229   PMID:3221863   PMID:3221869   PMID:6893015   PMID:7490078   PMID:7600958   PMID:7646816   PMID:7671812   PMID:7753195  
PMID:8482333   PMID:8562047   PMID:8764147   PMID:10349636   PMID:10922068   PMID:11042159   PMID:11076861   PMID:11260268   PMID:11785969   PMID:12063253   PMID:12477932   PMID:15194427  
PMID:15489334   PMID:15582152   PMID:15703188   PMID:15782199   PMID:16141072   PMID:16141073   PMID:16510873   PMID:16602821   PMID:16919471   PMID:16950128   PMID:16959763   PMID:17634366  
PMID:17967808   PMID:18303949   PMID:18498732   PMID:18498735   PMID:18545671   PMID:18614564   PMID:18796539   PMID:18804439   PMID:18824598   PMID:18827014   PMID:19015242   PMID:19144319  
PMID:19279220   PMID:19423573   PMID:19497859   PMID:19917259   PMID:20236507   PMID:20354175   PMID:20662086   PMID:20847274   PMID:20976199   PMID:21327095   PMID:21502360   PMID:21565611  
PMID:21668976   PMID:21778137   PMID:21873635   PMID:21900491   PMID:22246323   PMID:22403730   PMID:22425987   PMID:22472442   PMID:22496869   PMID:22673621   PMID:23840778   PMID:24098136  
PMID:24194600   PMID:24272803   PMID:24302573   PMID:24457600   PMID:24614889   PMID:24623780   PMID:24840128   PMID:24952082   PMID:26370502   PMID:26527743   PMID:27840001   PMID:28591571  
PMID:29265728   PMID:29459677   PMID:29518331   PMID:29669786   PMID:29891944   PMID:30333137   PMID:30595499   PMID:30713523   PMID:30962377   PMID:32325033  


Genomics

Comparative Map Data
Actg1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3911120,236,513 - 120,239,321 (-)NCBIGRCm39mm39
GRCm39 Ensembl11120,236,516 - 120,239,368 (-)Ensembl
GRCm3811120,345,687 - 120,348,495 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl11120,345,690 - 120,348,542 (-)EnsemblGRCm38mm10GRCm38
MGSCv3711120,207,004 - 120,209,798 (-)NCBIGRCm37mm9NCBIm37
MGSCv3611120,161,780 - 120,171,339 (-)NCBImm8
Celera11132,080,255 - 132,083,049 (-)NCBICelera
Cytogenetic Map11E2NCBI
ACTG1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl1781,509,413 - 81,523,847 (-)EnsemblGRCh38hg38GRCh38
GRCh381781,509,971 - 81,512,799 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh371779,476,997 - 79,479,825 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361777,091,594 - 77,094,422 (-)NCBINCBI36hg18NCBI36
Build 341777,091,593 - 77,094,422NCBI
Cytogenetic Map17q25.3NCBI
HuRef1774,925,813 - 74,928,708 (-)NCBIHuRef
CHM1_11779,563,278 - 79,566,173 (-)NCBICHM1_1
Actg1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.210105,619,738 - 105,622,587 (-)NCBI
Rnor_6.0 Ensembl10109,519,134 - 109,520,846 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.0 Ensembl375,643,054 - 75,644,954 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.010109,518,429 - 109,521,288 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.010109,113,705 - 109,116,103 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.410109,773,489 - 109,776,334 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.110109,787,992 - 109,790,826 (-)NCBI
Celera10104,164,981 - 104,167,826 (-)NCBICelera
Cytogenetic Map10q32.3NCBI
Actg1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555061,546,678 - 1,552,105 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049555061,546,678 - 1,549,611 (+)NCBIChiLan1.0ChiLan1.0
ACTG1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11781,668,221 - 81,671,087 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1781,668,221 - 81,671,087 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01775,965,911 - 75,968,822 (-)NCBIMhudiblu_PPA_v0panPan3
ACTG1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.19635,978 - 638,328 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl9635,978 - 638,328 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha91,238,649 - 1,241,000 (+)NCBI
ROS_Cfam_1.091,229,608 - 1,232,436 (+)NCBI
UMICH_Zoey_3.191,254,519 - 1,256,870 (+)NCBI
UNSW_CanFamBas_1.091,380,335 - 1,382,686 (+)NCBI
UU_Cfam_GSD_1.091,460,286 - 1,462,637 (+)NCBI
Actg1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244056021,238,788 - 1,241,248 (+)NCBI
SpeTri2.0NW_0049365945,170,711 - 5,173,251 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ACTG1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl121,160,350 - 1,323,217 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1121,320,355 - 1,323,219 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2121,163,186 - 1,166,032 (+)NCBISscrofa10.2Sscrofa10.2susScr3
ACTG1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11673,456,907 - 73,459,777 (-)NCBI
Vero_WHO_p1.0NW_02366607744,839,199 - 44,842,119 (-)NCBI
Actg1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462480110,496,876 - 10,499,737 (-)NCBI

Position Markers
RH125445  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map11E2UniSTS
RH125494  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map11E2UniSTS
PMC137792P1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map11E2UniSTS
Cytogenetic Map5G2UniSTS
cM Map580.0UniSTS
PMC138261P1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map11E2UniSTS
Cytogenetic Map5G2UniSTS
cM Map580.0UniSTS
PMC156330P1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
MGSCv3711120,207,705 - 120,208,539UniSTSGRCm37
Celera11132,080,956 - 132,081,790UniSTS
PMC24561P1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map11E2UniSTS
Cytogenetic Map5G2UniSTS
cM Map580.0UniSTS
PMC33464P1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map11E2UniSTS
PMC97568P1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map11E2UniSTS
Cytogenetic Map5G2UniSTS
cM Map580.0UniSTS
PMC156124P2  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map11E2UniSTS
Cytogenetic Map5G2UniSTS
cM Map580.0UniSTS
Acta1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map8E2UniSTS
Cytogenetic Map19C3UniSTS
Cytogenetic Map11E2UniSTS
cM Map867.0UniSTS


QTLs in Region (GRCm38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
15039374Adip29_madiposity 29 (mouse)1186717494120717494Mouse
15039376Bw42_mbody weight QTL 42 (mouse)1186717494120717494Mouse
15014785Mvlq1_mmacrovesicular liver lesion QTL 1 (mouse)1186717494120717494Mouse
27226789Feml16_mfemur length 16, 10 week (mouse)1187600000126900000Mouse
10044007Hbnr14_mHeligmosomoides bakeri nematode resistance 14 (mouse)Not determined1187611774121611872Mouse
11251723Ewc5_methanol withdrawal and consumption 5 (mouse)1189978425122082543Mouse
1302034Pkccl_mprotein kinase C content in lungs (mouse)Not determined1191713782122082543Mouse
1558753Ath19_matherosclerosis 19 (mouse)Not determined1191713782122082543Mouse
1301095El6_mepilepsy 6 (mouse)Not determined1193338357122082543Mouse
1300944Alcp20_malcohol preference locus 20 (mouse)Not determined1195513139122082543Mouse
1301958Alcp18_malcohol preference locus 18 (mouse)Not determined1195513139122082543Mouse
1300962Cd8mts4_mCD8 memory T cell subset 4 (mouse)Not determined1196246848122082543Mouse
1301057Nidd4_mnon-insulin-dependent diabetes mellitus 4 (mouse)Not determined1196919310122082543Mouse
1301983Berr2_mberghei resistance locus 2 (mouse)Not determined1198461783122082543Mouse
10043976Obq33_mobesity QTL 33 (mouse)Not determined1198609643122082543Mouse
10044001Alcw8_malcohol withdrawal 8 (mouse)Not determined1199363361122082543Mouse
11553867Stmm5_mskin tumor modifier of MSM 5 (mouse)11100167277122082543Mouse
11341721Rvfs2_mRift Valley fever susceptibility 2 (mouse)11100363360120996339Mouse
1301012Vispl_mvisual placing (mouse)Not determined11101131764122082543Mouse

miRNA Target Status

Confirmed Target Of
miRNA GeneMature miRNAMethod NameResult TypeData TypeSupport TypePMID
Mirlet7bmmu-let-7b-5pTarbaseexternal_infoReporter GeneNEGATIVE

Predicted Target Of
Summary Value
Count of predictions:2283
Count of miRNA genes:719
Interacting mature miRNAs:894
Transcripts:ENSMUST00000062147, ENSMUST00000071555, ENSMUST00000089616, ENSMUST00000106215, ENSMUST00000128055, ENSMUST00000131103, ENSMUST00000141406, ENSMUST00000144868, ENSMUST00000156343
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001313923 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_009609 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AF195094 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK012251 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK076081 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK087983 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK149927 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK150209 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK152202 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK153446 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK157726 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK159867 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK162157 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK177025 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK179204 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK179650 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK181442 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK183723 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK183894 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK184769 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK185053 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK185831 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK188706 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK190672 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK195338 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK200871 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK201714 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK202078 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK204894 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK205891 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK206115 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK206281 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK208587 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK208588 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK209715 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK212177 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK213267 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK217011 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK218702 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL669855 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC003337 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC008258 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC018571 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC021796 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC023248 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC099371 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BU706992 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466558 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CX567990 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  M21495 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  X13055 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000062147   ⟹   ENSMUSP00000101821
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl11120,346,033 - 120,348,475 (-)Ensembl
RefSeq Acc Id: ENSMUST00000071555   ⟹   ENSMUSP00000071486
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl11120,345,690 - 120,348,542 (-)Ensembl
RefSeq Acc Id: ENSMUST00000089616   ⟹   ENSMUSP00000087043
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl11120,346,382 - 120,346,977 (-)Ensembl
RefSeq Acc Id: ENSMUST00000106215   ⟹   ENSMUSP00000101822
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl11120,345,691 - 120,348,091 (-)Ensembl
RefSeq Acc Id: ENSMUST00000128055   ⟹   ENSMUSP00000134296
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl11120,347,080 - 120,348,479 (-)Ensembl
RefSeq Acc Id: ENSMUST00000131103   ⟹   ENSMUSP00000134070
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl11120,346,445 - 120,348,489 (-)Ensembl
RefSeq Acc Id: ENSMUST00000141406
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl11120,347,087 - 120,348,469 (-)Ensembl
RefSeq Acc Id: ENSMUST00000144868
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl11120,347,720 - 120,348,495 (-)Ensembl
RefSeq Acc Id: ENSMUST00000156343
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl11120,347,259 - 120,348,485 (-)Ensembl
RefSeq Acc Id: NM_001313923   ⟹   NP_001300852
RefSeq Status: REVIEWED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3911120,236,513 - 120,239,321 (-)NCBI
GRCm3811120,345,687 - 120,348,495 (-)NCBI
Sequence:
RefSeq Acc Id: NM_009609   ⟹   NP_033739
RefSeq Status: REVIEWED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3911120,236,513 - 120,239,321 (-)NCBI
GRCm3811120,345,687 - 120,348,495 (-)NCBI
MGSCv3711120,207,004 - 120,209,798 (-)RGD
Celera11132,080,255 - 132,083,049 (-)RGD
cM Map11 ENTREZGENE
Sequence:
Reference Sequences
RefSeq Acc Id: NP_033739   ⟸   NM_009609
- Peptide Label: isoform 1
- UniProtKB: P63260 (UniProtKB/Swiss-Prot),   Q4KL81 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001300852   ⟸   NM_001313923
- Peptide Label: isoform 2
- UniProtKB: Q4KL81 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSMUSP00000071486   ⟸   ENSMUST00000071555
RefSeq Acc Id: ENSMUSP00000134070   ⟸   ENSMUST00000131103
RefSeq Acc Id: ENSMUSP00000101822   ⟸   ENSMUST00000106215
RefSeq Acc Id: ENSMUSP00000101821   ⟸   ENSMUST00000062147
RefSeq Acc Id: ENSMUSP00000087043   ⟸   ENSMUST00000089616
RefSeq Acc Id: ENSMUSP00000134296   ⟸   ENSMUST00000128055

Promoters
RGD ID:6820311
Promoter ID:MM_KWN:10903
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   3T3L1_Day6,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:ENSMUST00000062147,   ENSMUST00000089616,   ENSMUST00000106215,   ENSMUST00000106216,   LINCRNA_198,   OTTMUST00000009340,   OTTMUST00000009342,   OTTMUST00000009343,   OTTMUST00000009344,   OTTMUST00000009346,   OTTMUST00000009347,   OTTMUST00000009384
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv3611120,208,431 - 120,210,532 (-)MPROMDB
RGD ID:8677660
Promoter ID:EPDNEW_M16860
Type:multiple initiation site
Name:Actg1_1
Description:Mus musculus actin, gamma, cytoplasmic 1 , transcript variant1, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3811120,348,492 - 120,348,552EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:87906 AgrOrtholog
Ensembl Genes ENSMUSG00000062825 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Protein ENSMUSP00000071486 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUSP00000087043 UniProtKB/TrEMBL
  ENSMUSP00000101821 UniProtKB/TrEMBL
  ENSMUSP00000101822 UniProtKB/Swiss-Prot
  ENSMUSP00000134070 UniProtKB/TrEMBL
  ENSMUSP00000134296 UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000062147 UniProtKB/TrEMBL
  ENSMUST00000071555 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUST00000089616 UniProtKB/TrEMBL
  ENSMUST00000106215 UniProtKB/Swiss-Prot
  ENSMUST00000128055 UniProtKB/TrEMBL
  ENSMUST00000131103 UniProtKB/TrEMBL
InterPro Actin UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Actin/actin-like_CS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Actin_CS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ATPase_NBD UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:11465 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGD MGI:87906 ENTREZGENE
NCBI Gene 11465 ENTREZGENE
PANTHER PTHR11937 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Actin UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Actg1 PhenoGen
PRINTS ACTIN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE ACTINS_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ACTINS_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ACTINS_ACT_LIKE UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART ACTIN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF53067 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt ACTG_MOUSE UniProtKB/Swiss-Prot
  B1ATY1_MOUSE UniProtKB/TrEMBL
  F8WGM8_MOUSE UniProtKB/TrEMBL
  G3UYG0_MOUSE UniProtKB/TrEMBL
  G3UZ07_MOUSE UniProtKB/TrEMBL
  P63260 ENTREZGENE
  Q3TSB7_MOUSE UniProtKB/TrEMBL
  Q3UD81_MOUSE UniProtKB/TrEMBL
  Q4KL81 ENTREZGENE, UniProtKB/TrEMBL
  Q9QZ83_MOUSE UniProtKB/TrEMBL
UniProt Secondary P02571 UniProtKB/Swiss-Prot
  P14104 UniProtKB/Swiss-Prot
  P99022 UniProtKB/Swiss-Prot
  Q3UDT9 UniProtKB/TrEMBL