Gm52494 (predicted gene, 52494) - Rat Genome Database

Name: Gm52494
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

Gene: Gm52494 (predicted gene, 52494) Mus musculus

Analyze

Symbol:

Gm52494

Name:

predicted gene, 52494

RGD ID:

15020286

MGI Page

MGI

Description:

Type:

ncrna

RefSeq Status:

MODEL

Latest Assembly:

GRCm39 - Mouse Genome Assembly GRCm39

Position:

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	6	72,356,263 - 72,362,201 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm38	6	72,379,281 - 72,385,218 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
Cytogenetic Map	6	C1	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

References

Additional References at PubMed

PMID:14610273

Genomics

QTLs in Region (GRCm39)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
25440480	Moaq2_m	modifier of alien QTL 2 (mouse)					6	3050001	117476961	Mouse
26884414	Bzwq12_m	bi-zygomatic width QTL 12, 16 week (mouse)					6	3400000	139076998	Mouse
1300556	Cia6_m	collagen induced arthritis QTL 6 (mouse)			Not determined		6	4464884	87403016	Mouse
4142271	Egq8_m	early growth QTL 8 (mouse)			Not determined			4503823	96633110	Mouse
4142232	W6q4_m	weight 6 weeks QTL 4 (mouse)			Not determined			4503823	96633110	Mouse
4142126	W3q3_m	weight 3 weeks QTL 3 (mouse)			Not determined			4503823	96633110	Mouse
4142361	W10q11_m	weight 10 weeks QTL 11 (mouse)			Not determined			4503823	96633110	Mouse
26884441	Sklq3_m	skull length QTL 3, 5 week (mouse)					6	7600000	80576983	Mouse
1357442	Dbts1_m	diabetes 1 (mouse)			Not determined		6	18234147	73364675	Mouse
13208564	Bmiq7_m	body mass index QTL 7 (mouse)					6	24999999	79976983	Mouse
4141782	Mrdq5_m	modifier of retinal degeneration QTL 5 (mouse)			Not determined			32827585	78215957	Mouse
1558984	Cplaq9_m	circadian period of locomotor activity 9 (mouse)			Not determined		6	38646560	92584431	Mouse
12880424	V25Dq4_m	vitamin D inactive form serum level QTL 4 (mouse)					6	41576985	75576985	Mouse
11040600	Lmr4c_m	leishmaniasis resistance 4c (mouse)					6	42093358	76093500	Mouse
11040601	Lmr4a_m	leishmaniasis resistance 4a (mouse)					6	42093358	76093500	Mouse
11533915	Mts4_m	mammary tumor susceptibility 4 (mouse)					6	42093358	76093500	Mouse
1301266	Lmr4_m	leishmaniasis resistance 4 (mouse)			Not determined		6	42093358	76093500	Mouse
12910785	Pwgrq16_m	post-weaning growth rate QTL 16 (mouse)					6	43803747	77788506	Mouse
12910798	Pwgrq5_m	pre-weaning growth rate QTL 5 (mouse)					6	43803747	77788506	Mouse
12910802	Pwbwq12_m	post-weaning body weight QTL 12 (mouse)					6	43803747	77788506	Mouse
12910807	Pwbwq11_m	post-weaning body weight QTL 11 (mouse)					6	43803747	77788506	Mouse
12910809	Pwbwq10_m	post-weaning body weight QTL 10 (mouse)					6	43803747	77788506	Mouse
12910820	Ogrq3_m	overall growth rate QTL 3 (mouse)					6	43803747	77788506	Mouse
1300618	Pgia19_m	proteoglycan induced arthritis 19 (mouse)			Not determined		6	45290993	87403016	Mouse
10412157	Fl1n_m	fatty liver 1 in NSY (mouse)			Not determined		6	45290993	128811995	Mouse
4142259	Tabw2_m	tally ho associated body weight 2 (mouse)			Not determined			46912919	136400690	Mouse
25314319	Histh6_m	histamine hypersensitivity 6 (mouse)					6	48696934	125336963	Mouse
25314320	Histh5_m	histamine hypersensitivity 5 (mouse)					6	48696934	148351498	Mouse
4140983	Srilp_m	sleep response to influenza, light phase (mouse)			Not determined			48703490	75424693	Mouse
1301962	Eila2_m	ethanol induced locomotor activity 2 (mouse)			Not determined		6	48703490	125333748	Mouse
1301254	Skts11_m	skin tumor susceptibility 11 (mouse)			Not determined		6	51156134	85156284	Mouse
1357683	Igf1sl1_m	IGF-1 serum levels 1 (mouse)			Not determined		6	52138693	116132228	Mouse
4141028	Mclr_m	methylcholanthrene lymphoma resistance (mouse)			Not determined			54350411	88356155	Mouse
15039373	Adip28_m	adiposity 28 (mouse)					6	56285194	90285194	Mouse
15039375	Bw41_m	body weight QTL 41 (mouse)					6	56285194	90285194	Mouse
1558977	Skmw10_m	skeletal muscle weight 10 (mouse)			Not determined		6	58424566	92424693	Mouse
10043972	Obq28_m	obesity QTL 28 (mouse)			Not determined		6	58517416	92517416	Mouse
10412119	Stv_m	striatal volumne (mouse)			Not determined		6	60026991	100026967	Mouse
1301740	Bwq2_m	body weight QTL 2 (mouse)			Not determined		6	60034663	94034782	Mouse
1301369	Im4_m	immunoregulatory 4 (mouse)			Not determined		6	63461721	97461888	Mouse
1300650	Bw18_m	body weight QTL 18 (mouse)			Not determined		6	66690851	100691013	Mouse
1301813	Skl3_m	skeletal size (tail length) 3 (mouse)			Not determined		6	70402880	104403016	Mouse
1301034	Egrm2_m	early growth rate (mouse)			Not determined		6	70402880	104403016	Mouse
1301876	Bits2_m	bitterness sensitivity 2 (mouse)			Not determined		6	70402880	104403016	Mouse
4141990	Etax6_m	ethanol induced ataxia 6 (mouse)			Not determined			71299605	86252701	Mouse
1302020	Bbaa20_m	B.burgdorferi-associated arthritis 20 (mouse)			Not determined		6	71299605	93441074	Mouse
1300869	Stheal5_m	soft tissue heal 5 (mouse)			Not determined		6	71552042	105552160	Mouse
1301521	Pas1c_m	pulmonary adenoma susceptibility 1c (mouse)			Not determined		6	71958006	105958152	Mouse
1300954	Fcsa1_m	femoral cross-sectional area 1 (mouse)			Not determined		6	71958006	105958152	Mouse

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	XR_003953501	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_003953502	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_003953503	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC116115	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

XR_003953501

Type:

NON-CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	6	72,356,263 - 72,362,201 (+)	NCBI

Sequence:

show sequence

CAGAAAGGGGGACAAGGGAAGAAGAGATAGATGATGGAGCTGGAGACAGGCTGAAGGGATAAAA
TTAATGCATCCCCCAGACTCTGAACCCCCAAGGTTCTCCTGAACAGCCAGATAACCTAACCTGG
CGCAGCCTTCTTTTCAGAACTTCTCCTCAAGAGCTGAGAGCCAGTTGAAAGACCATCTCTGCCC
TGTACTCTCGGAAGTGGGCTCTCAGCTCCAGCCCATTCTCAGAGCCTCCCTCGGTTTCCTGGTG
TGGCCTCAAAGCTTAGGGCTACCTTCCTGCCACACTTCCCTTTCCTGCCTCCAGTTCCCTAGAG
ATGAGGCCATCCAGGCATTGCCACCCCTAGCCAGGCCACATCCATCCCATCTTAGAGTACTAAA
CTTGCTTCCAGTCTGGCCACCTTCCCAGGAGCCCTGGAAGGTGGGATCCAGGCATCAGTGGTCC
CTGACACTTTTGTCTTGGAAATGGCAAGTCTGCAGCAGGAGTGAATGGAAGTGTTTATCTGTCA
GCACGTCAGCACGGGGCCTCTACCAGGCATCTGCTCAGGTTTCCAACCCTTGGGCCAGCTCTGG
CTCCTCTTAGCCTGGGGAAGAGCTGGAGAGGTCATCGCATTACCTACCACTTCTCAGCAAAGGG
TTCTGAGTGCCTGGCAGCAGCGACCATAAACATCTTCTTTAACCTCTCAAGGACCCACCAAGAT
TGGGAGAAACCAGCCTGGAGGGGTTCCTCAGAAAGAAAGAAACAGACACTTGAAAGACACAGGA
GTAAAGCGC

hide sequence

RefSeq Acc Id:

XR_003953502

Type:

NON-CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	6	72,356,263 - 72,361,740 (+)	NCBI

Sequence:

show sequence

CAGAAAGGGGGACAAGGGAAGAAGAGATAGATGATGGAGCTGGAGACAGGCTGAAGGGATAAAA
TTAATGCATCCCCCAGACTCTGAACCCCCAAGGTTCTCCTGAACAGCCAGATAACCTAACCTGG
CGCAGCCTTCTTTTCAGAACTTCTCCTCAAGAGCTGAGAGCCAGTTGAAAGACCATCTCTGCCC
TGTACTCTCGGAAGTGGGCTCTCAGCTCCAGCCCATTCTCAGAGCCTCCCTCGGTTTCCTGGTG
TGGCCTCAAAGCTTAGGGCTACCTTCCTGCCACACTTCCCTTTCCTGCCTCCAGTTCCCTAGAG
ATGAGGCCATCCAGGCATTGCCACCCCTAGCCAGGCCACATCCATCCCATCTTAGAGTACTAAA
CTTGCTTCCAGTCTGGCCACCTTCCCAGGAGCCCTGGAAGGTGGGATCCAGGCATCAGTGGTCC
CTGACACTTTTGTCTTGGAAATGGCAAGTCTGCAGCAGGAGTGAATGGAAGTGTTTATCTGTCA
GCACGTCAGCACGGGGCCTCTACCAGGCATCTGCTCAGGTTTCCAACCCTTGGGCCAGCTCTGG
CTCCTCTTAGCCTGGGGAAGAGCTGGAGAGGTCATCGCATTACCTACCACTTCTCAGCAAAGGG
TTCTGAGTGCCTGGCAGCAGCGACCATAAACATCTTCTTTAACCTCTCAAGGACCCACCAAGGT
TGTTTCTAATTCTGGAAAGGTTGTGTAGGAACCAAGGACAGAGGAAGCCAAGAACCACAAGCCA
AGGCAGACTGGGCTCTGGAAAGAACCGCAGTGATGAAGAACCTGGTGGGAAGGAGGAGTCCAGA
AGACAGAAAGCTCATTGTGCTGTCAGCCTGGTCCTGTGACATTGACTCTGACTAGCCATGGGAC
TCTGGGGAGGGAGAGATGCTCACCACCACTCCCTCAGAACAGCTGAGATCCAGGCCTCTATAAA
GACCCAGAAAAGCAAGGATAGACAAAAGACAAACAGAACAACCCACAAAGGATACGCTGACTAG
CTCCTTCAGCCTCTCTCTGGCTCTGAGTCATACCTAGGCCATAGACGAGACATGGCAGAAGTGA
CAAGAGCCCTTGAACCAGGTCTTACATGACCCATCATCATATCCTTGCAAGCGTATCCAGGAGG
TCAGTTAAGGGACATGGCAGGGTCCCAGGAGGGCGCTGAATCCTGCATCCCACTCTAAAGTGCT
ATGAAGTTCTAATCCTCCTTATGGTAAGAGCTCTAGGAAATCCTTGTTCTTGTGAGTTGTGACA
ATGAACAGTGTGGTACAAAGAAAAACAGGAGGGCTCAGGAGAGGGCTCAGCAGGGAAAGCACTT
GTTATGCAAGCATGGGACCTGAGTCCAAATCTCTAGGACCCATATAAAAGTTTTATGTGTGCTT
CTTTCTGTAACCTCAGCACTGTGGAGATGGATCCCTAAGCCAAACTGATGAGCTCCAGGCTTAG
TGAGTGACTGTTTCAAAAAGTGGGGTGAGGGCTGGAGCTGTACCTCAGTACAGACTCTTATCTC
ACAGACCTTATGCTGTAGGCTCAACCGTCAGGAAGAAGAGTCCACTAGGTAGTAAGACAGAGAG
CGATAAAGACATCCAACATTGACCTCCGGCGTGCACACACTTGCACACATAGATGCACAAGCAC
CGGCATTCACCGATGCAGATATACACATACACATCTATACAAGAGAGAGGGAGAGAGATGGAAA
GATGGCTCGTTGTTTAAGAGTGCAAACTGTTCAACAATATGGCTGCCTAAACAAGATCTGAGCA
AGGACATCAACAGGCATGCTAGCACAGAGGGGGGAGGAACAACAATTCTCCAGAGTTGAGATTC
TTAATTGGTTATCAACACCAAGTACTCAGCCCTGTAATTATTTACATGCGAGCAAAACCAAACA
CAAATCTGCACACTGTGTATGCGTGTGTGTGTGTAAAACAATGAAAGAAAGAGGCCGTGAATTT
GAGAGGAAGTGAAGGGAGGATGATGAGTTGAGGGGTGTTAAGAGAGGAAAGGGAAGGGGCAACA
CAATATAATTATATTTTAATTAATAATCAAACATAAACTTTTACCTAAGGGGAAGGGGGGAAGA
GTGCAAACTGTTCTTGCAGAGGACTCCAGTTTGGTTCCAAGCGCCCATGTTGGGCTTGTAACTC
CAGGGGAACCAACATCCTCTTCTGGCCTCTGCAGGCTCTTCATT

hide sequence

RefSeq Acc Id:

XR_003953503

Type:

NON-CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	6	72,356,263 - 72,361,740 (+)	NCBI

Sequence:

show sequence

CAGAAAGGGGGACAAGGGAAGAAGAGATAGATGATGGAGCTGGAGACAGGCTGAAGGGATAAAA
TTAATGCATCCCCCAGACTCTGAACCCCCAAGGTTCTCCTGAACAGCCAGATAACCTAACCTGG
CGCAGCCTTCTTTTCAGAACTTCTCCTCAAGAGCTGAGAGCCAGTTGAAAGACCATCTCTGCCC
TGTACTCTCGGAAGTGGGCTCTCAGCTCCAGCCCATTCTCAGAGCCTCCCTCGGTTTCCTGGTG
TGGCCTCAAAGCTTAGGGCTACCTTCCTGCCACACTTCCCTTTCCTGCCTCCAGTTCCCTAGAG
ATGAGGCCATCCAGGCATTGCCACCCCTAGCCAGGCCACATCCATCCCATCTTAGAGTACTAAA
CTTGCTTCCAGTCTGGCCACCTTCCCAGGAGCCCTGGAAGGTGGGATCCAGGCATCAGTGGTCC
CTGACACTTTTGTCTTGGAAATGGCAAGTCTGCAGCAGGAGTGAATGGAAGTGTTTATCTGTCA
GCACGTCAGCACGGGGCCTCTACCAGGCATCTGCTCAGGTTTCCAACCCTTGGGCCAGCTCTGG
CTCCTCTTAGCCTGGGGAAGAGCTGGAGAGGTCATCGCATTACCTACCACTTCTCAGCAAAGGG
TTCTGAGTGCCTGGCAGCAGCGACCATAAACATCTTCTTTAACCTCTCAAGGACCCACCAAGGT
TGTGTAGGAACCAAGGACAGAGGAAGCCAAGAACCACAAGCCAAGGCAGACTGGGCTCTGGAAA
GAACCGCAGTGATGAAGAACCTGGTGGGAAGGAGGAGTCCAGAAGACAGAAAGCTCATTGTGCT
GTCAGCCTGGTCCTGTGACATTGACTCTGACTAGCCATGGGACTCTGGGGAGGGAGAGATGCTC
ACCACCACTCCCTCAGAACAGCTGAGATCCAGGCCTCTATAAAGACCCAGAAAAGCAAGGATAG
ACAAAAGACAAACAGAACAACCCACAAAGGATACGCTGACTAGCTCCTTCAGCCTCTCTCTGGC
TCTGAGTCATACCTAGGCCATAGACGAGACATGGCAGAAGTGACAAGAGCCCTTGAACCAGGTC
TTACATGACCCATCATCATATCCTTGCAAGCGTATCCAGGAGGTCAGTTAAGGGACATGGCAGG
GTCCCAGGAGGGCGCTGAATCCTGCATCCCACTCTAAAGTGCTATGAAGTTCTAATCCTCCTTA
TGGTAAGAGCTCTAGGAAATCCTTGTTCTTGTGAGTTGTGACAATGAACAGTGTGGTACAAAGA
AAAACAGGAGGGCTCAGGAGAGGGCTCAGCAGGGAAAGCACTTGTTATGCAAGCATGGGACCTG
AGTCCAAATCTCTAGGACCCATATAAAAGTTTTATGTGTGCTTCTTTCTGTAACCTCAGCACTG
TGGAGATGGATCCCTAAGCCAAACTGATGAGCTCCAGGCTTAGTGAGTGACTGTTTCAAAAAGT
GGGGTGAGGGCTGGAGCTGTACCTCAGTACAGACTCTTATCTCACAGACCTTATGCTGTAGGCT
CAACCGTCAGGAAGAAGAGTCCACTAGGTAGTAAGACAGAGAGCGATAAAGACATCCAACATTG
ACCTCCGGCGTGCACACACTTGCACACATAGATGCACAAGCACCGGCATTCACCGATGCAGATA
TACACATACACATCTATACAAGAGAGAGGGAGAGAGATGGAAAGATGGCTCGTTGTTTAAGAGT
GCAAACTGTTCAACAATATGGCTGCCTAAACAAGATCTGAGCAAGGACATCAACAGGCATGCTA
GCACAGAGGGGGGAGGAACAACAATTCTCCAGAGTTGAGATTCTTAATTGGTTATCAACACCAA
GTACTCAGCCCTGTAATTATTTACATGCGAGCAAAACCAAACACAAATCTGCACACTGTGTATG
CGTGTGTGTGTGTAAAACAATGAAAGAAAGAGGCCGTGAATTTGAGAGGAAGTGAAGGGAGGAT
GATGAGTTGAGGGGTGTTAAGAGAGGAAAGGGAAGGGGCAACACAATATAATTATATTTTAATT
AATAATCAAACATAAACTTTTACCTAAGGGGAAGGGGGGAAGAGTGCAAACTGTTCTTGCAGAG
GACTCCAGTTTGGTTCCAAGCGCCCATGTTGGGCTTGTAACTCCAGGGGAACCAACATCCTCTT
CTGGCCTCTGCAGGCTCTTCATT

hide sequence

Additional Information

External Database Links

Database	Acc Id	Source(s)
MGD	MGI:6366713	ENTREZGENE
NCBI Gene	Gm52494	ENTREZGENE
PhenoGen	Gm52494	PhenoGen

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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