AABR07033324.1 (null) - Rat Genome Database

Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Gene: AABR07033324.1 (null) Rattus norvegicus
Analyze
Symbol: AABR07033324.1
Name:
RGD ID: 15013832
Description: Predicted to be involved in clathrin coat disassembly.
Type: protein-coding
Latest Assembly: mRatBN7.2 Ensembl - mRatBN7.2 Assembly Ensembl
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2 Ensembl1117,466,782 - 17,468,721 (-)Ensembl
Rnor_6.0 Ensembl1117,336,444 - 17,340,373 (-)EnsemblRnor6.0rn6Rnor6.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

References - curated
1. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.

Genomics


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 30 33 22 16 22 6 6 71 32 34 8 6
Low 3 13 24 19 3 19 2 5 3 3 6 3 2
Below cutoff 1

Sequence

Nucleotide Sequences

Reference Sequences
RefSeq Acc Id: ENSRNOT00000089762   ⟹   ENSRNOP00000069495
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1117,466,782 - 17,468,721 (-)Ensembl
Rnor_6.0 Ensembl1117,336,444 - 17,340,373 (-)Ensembl
Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSRNOG00000061099 Ensembl, UniProtKB/TrEMBL
Ensembl Protein ENSRNOP00000069495 UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000089762 UniProtKB/TrEMBL
Gene3D-CATH 1.20.1270.10 UniProtKB/TrEMBL
  2.60.34.10 UniProtKB/TrEMBL
InterPro ATPase_NBD UniProtKB/TrEMBL
  Heat_shock_70_CS UniProtKB/TrEMBL
  HSP70_C_sf UniProtKB/TrEMBL
  HSP70_peptide-bd_sf UniProtKB/TrEMBL
  Hsp_70_fam UniProtKB/TrEMBL
PANTHER PTHR19375 UniProtKB/TrEMBL
Pfam HSP70 UniProtKB/TrEMBL
PhenoGen AABR07033324.1 PhenoGen
PROSITE HSP70_3 UniProtKB/TrEMBL
Superfamily-SCOP SSF100920 UniProtKB/TrEMBL
  SSF100934 UniProtKB/TrEMBL
  SSF53067 UniProtKB/TrEMBL
UniProt A0A0G2JVI3_RAT UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2019-11-08 AABR07033324.1        Symbol and Name status set to provisional 45752 PROVISIONAL