AABR07008911.1 (null) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Gene: AABR07008911.1 (null) Rattus norvegicus
Analyze
Symbol: AABR07008911.1
Name:
RGD ID: 15013162
Description:
Type: protein-coding
Previously known as: AC113901.1
Latest Assembly: mRatBN7.2 Ensembl - mRatBN7.2 Assembly Ensembl
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2 Ensembl276,500,033 - 76,500,935 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.0 Ensembl278,427,178 - 78,427,751 (-)EnsemblRnor6.0rn6Rnor6.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
cytoplasm  (IBA)
nucleus  (IBA)

Molecular Function
mRNA binding  (IBA)

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.

Genomics


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system reproductive system respiratory system appendage
High
Medium
Low 1 1 1 1
Below cutoff 2 2 1 1 1 3 1 1

Sequence

Nucleotide Sequences

Reference Sequences
RefSeq Acc Id: ENSRNOT00000077768   ⟹   ENSRNOP00000068578
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl278,427,178 - 78,427,751 (-)Ensembl
Protein Sequences
Ensembl Protein ENSRNOP00000069439.2
Reference Protein Sequences
RefSeq Acc Id: ENSRNOP00000068578   ⟸   ENSRNOT00000077768
Protein Domains
HnRNP M nuclear localisation signal

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-A0A0G2JVD4-F1-model_v2 AlphaFold A0A0G2JVD4 1-94 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSRNOG00000056969 Ensembl, UniProtKB/TrEMBL
  ENSRNOG00000060222 Ensembl
Ensembl Transcript ENSRNOT00000087246.2 UniProtKB/TrEMBL
InterPro HnRNP_M_PY-NLS UniProtKB/TrEMBL
Pfam HnRNP_M UniProtKB/TrEMBL
PhenoGen AABR07008911.1 PhenoGen
RatGTEx ENSRNOG00000056969 RatGTEx
  ENSRNOG00000060222 RatGTEx
UniProt A0A0G2JVD4_RAT UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-01-13 AABR07008911.1    AC113901.1    Symbol and/or name change 19259462 PROVISIONAL
2019-11-08 AC113901.1        Symbol and Name status set to provisional 45752 PROVISIONAL