AABR07025140.1 (null) - Rat Genome Database

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Gene: AABR07025140.1 (null) Rattus norvegicus
Analyze
Symbol: AABR07025140.1
Name:
RGD ID: 15012295
Description: Predicted to enable ATP binding activity and nucleic acid binding activity. Predicted to be involved in positive regulation of MDA-5 signaling pathway; positive regulation of RIG-I signaling pathway; and response to virus. Predicted to be located in cytosol and intermediate filament cytoskeleton.
Type: protein-coding
Latest Assembly: mRatBN7.2 Ensembl - mRatBN7.2 Assembly Ensembl
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2 Ensembl1628,076,999 - 28,179,526 (-)Ensembl
Rnor_6.0 Ensembl1629,834,086 - 29,936,307 (-)EnsemblRnor6.0rn6Rnor6.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

Genomics


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 2 4 15 1 18 1 2 11 11
Low 1 29 23 21 1 21 8 9 19 25 24 8
Below cutoff 10 19 19 19 2 49 8 6

Sequence

Nucleotide Sequences

Reference Sequences
RefSeq Acc Id: ENSRNOT00000083943   ⟹   ENSRNOP00000072550
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1628,076,999 - 28,179,526 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000084847   ⟹   ENSRNOP00000074273
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1628,076,999 - 28,179,526 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000088707   ⟹   ENSRNOP00000074057
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1628,076,999 - 28,179,526 (-)Ensembl
Rnor_6.0 Ensembl1629,834,086 - 29,936,307 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000095521   ⟹   ENSRNOP00000096643
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1628,076,999 - 28,179,526 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000096189   ⟹   ENSRNOP00000095966
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1628,076,999 - 28,179,526 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000100929   ⟹   ENSRNOP00000087637
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1628,076,999 - 28,179,526 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000101108   ⟹   ENSRNOP00000084996
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1628,076,999 - 28,179,526 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000106980   ⟹   ENSRNOP00000091014
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1628,076,999 - 28,179,526 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000112917   ⟹   ENSRNOP00000097374
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1628,076,999 - 28,179,526 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000119308   ⟹   ENSRNOP00000076782
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1628,076,999 - 28,179,526 (-)Ensembl
Protein Sequences
Reference Sequences
RefSeq Acc Id: ENSRNOP00000074057   ⟸   ENSRNOT00000088707
RefSeq Acc Id: ENSRNOP00000087637   ⟸   ENSRNOT00000100929
RefSeq Acc Id: ENSRNOP00000096643   ⟸   ENSRNOT00000095521
RefSeq Acc Id: ENSRNOP00000072550   ⟸   ENSRNOT00000083943
RefSeq Acc Id: ENSRNOP00000074273   ⟸   ENSRNOT00000084847
RefSeq Acc Id: ENSRNOP00000091014   ⟸   ENSRNOT00000106980
RefSeq Acc Id: ENSRNOP00000076782   ⟸   ENSRNOT00000119308
RefSeq Acc Id: ENSRNOP00000095966   ⟸   ENSRNOT00000096189
RefSeq Acc Id: ENSRNOP00000097374   ⟸   ENSRNOT00000112917
RefSeq Acc Id: ENSRNOP00000084996   ⟸   ENSRNOT00000101108
Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSRNOG00000059097 Ensembl, UniProtKB/TrEMBL
Ensembl Protein ENSRNOP00000074057 UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000088707 UniProtKB/TrEMBL
InterPro DEAD/DEAH_box_helicase_dom UniProtKB/TrEMBL
  Helicase_ATP-bd UniProtKB/TrEMBL
  Helicase_C UniProtKB/TrEMBL
  P-loop_NTPase UniProtKB/TrEMBL
Pfam DEAD UniProtKB/TrEMBL
  Helicase_C UniProtKB/TrEMBL
PhenoGen AABR07025140.1 PhenoGen
PROSITE HELICASE_ATP_BIND_1 UniProtKB/TrEMBL
  HELICASE_CTER UniProtKB/TrEMBL
SMART DEXDc UniProtKB/TrEMBL
  HELICc UniProtKB/TrEMBL
Superfamily-SCOP SSF52540 UniProtKB/TrEMBL
UniProt A0A0G2K744_RAT UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2019-11-08 AABR07025140.1        Symbol and Name status set to provisional 45752 PROVISIONAL