AC080157.1 (null) - Rat Genome Database

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Gene: AC080157.1 (null) Rattus norvegicus
Analyze
Symbol: AC080157.1
Name:
RGD ID: 15011665
Description:
Type: protein-coding
Latest Assembly: mRatBN7.2 Ensembl - mRatBN7.2 Assembly Ensembl
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2 Ensembl1113,280,886 - 113,287,665 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.0 Ensembl1254,530,121 - 254,575,074 (+)EnsemblRnor6.0rn6Rnor6.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 1 1 1 1 1 3 1 3
Low 2 11 28 12 18 12 8 11 10 11 15 8 8
Below cutoff 32 26 26 26 61 24 25

Sequence

Nucleotide Sequences

Reference Sequences
RefSeq Acc Id: ENSRNOT00000089627   ⟹   ENSRNOP00000071335
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl1254,530,121 - 254,575,074 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000091377   ⟹   ENSRNOP00000070369
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1113,280,886 - 113,287,665 (-)Ensembl
Rnor_6.0 Ensembl1254,531,659 - 254,574,124 (+)Ensembl
Protein Sequences
Ensembl Protein ENSRNOP00000070369.2
Reference Protein Sequences
RefSeq Acc Id: ENSRNOP00000071335   ⟸   ENSRNOT00000089627
RefSeq Acc Id: ENSRNOP00000070369   ⟸   ENSRNOT00000091377

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-A0A0G2K076-F1-model_v2 AlphaFold A0A0G2K076 1-1308 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSRNOG00000058277 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000091377.2 UniProtKB/TrEMBL
PhenoGen AC080157.1 PhenoGen
RatGTEx ENSRNOG00000058277 RatGTEx
UniProt A0A0G2JXQ9_RAT UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2019-11-08 AC080157.1        Symbol and Name status set to provisional 45752 PROVISIONAL