AABR07028997.1 (null) - Rat Genome Database

Name: AABR07028997.1
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

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Gene: AABR07028997.1 (null) Rattus norvegicus

Analyze

General
Array IDs
References

Symbol:

AABR07028997.1

Name:

Description:

ENCODES a protein that exhibits ATP binding (inferred); ATPase activity (inferred)

Type:

protein-coding

Latest Assembly:

Rnor_6.0 Ensembl - RGSC Genome Assembly v6.0 Ensembl

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rnor_6.0 Ensembl	10	1,741,216 - 1,744,647 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation (Toggle Annotation Detail/Summary View)

Gene Ontology Annotations

Biological Process

Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
glutathione transmembrane transport		IBA	MGI:MGI:102676 more ...	13792537	PMID:21873635	GO_Central
transmembrane transport		IBA	MGI:MGI:102676 more ...	13792537	PMID:21873635	GO_Central
xenobiotic transport		IBA	MGI:MGI:102676 more ...	13792537	PMID:21873635	GO_Central

Cellular Component

Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
basolateral plasma membrane		IBA	PANTHER:PTN002795564 more ...	13792537	PMID:21873635	GO_Central
membrane		IBA	CGD:CAL0000178329 more ...	13792537	PMID:21873635	GO_Central

Molecular Function

Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
ATP binding		IEA	InterPro:IPR003439	1600115	GO_REF:0000002	InterPro	GO_REF:0000002
ATPase activity		IEA	InterPro:IPR003439	1600115	GO_REF:0000002	InterPro	GO_REF:0000002
ATPase-coupled transmembrane transporter activity		IBA	MGI:MGI:102676 more ...	13792537	PMID:21873635	GO_Central
ATPase-coupled xenobiotic transmembrane transporter activity		IBA	PANTHER:PTN002795564, RGD:3112	13792537	PMID:21873635	GO_Central
glutathione transmembrane transporter activity		IBA	MGI:MGI:102676 more ...	13792537	PMID:21873635	GO_Central

Gene Ontology Annotations

Biological Process

	glutathione transmembrane transport (IBA)
	transmembrane transport (IBA)

xenobiotic transport (IBA)

Cellular Component

basolateral plasma membrane (IBA)

membrane (IBA)

Molecular Function

	ATP binding (IEA)
	ATPase activity (IEA)

	ATPase-coupled transmembrane transporter activity (IBA)
	ATPase-coupled xenobiotic transmembrane transporter activity (IBA)

glutathione transmembrane transporter activity (IBA)

References - curated

1.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.

Genomics

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	appendage
High
Medium											5
Low	3	42	39	23	19	23	8	11	74	35	36	11	8
Below cutoff			15	15		15

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences

Reference Sequences

RefSeq Acc Id:

ENSRNOT00000081886 ⟹ ENSRNOP00000073429

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0 Ensembl	10	1,741,216 - 1,744,647 (-)	Ensembl

Protein Sequences

Reference Sequences

RefSeq Acc Id:

ENSRNOP00000073429 ⟸ ENSRNOT00000081886

Protein Domains

ABC transporter

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSRNOG00000057978	Ensembl, UniProtKB/TrEMBL
Ensembl Protein	ENSRNOP00000073429	UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000081886	UniProtKB/TrEMBL
InterPro	ABC_transporter-like	UniProtKB/TrEMBL
	P-loop_NTPase	UniProtKB/TrEMBL
Pfam	ABC_tran	UniProtKB/TrEMBL
PhenoGen	AABR07028997.1	PhenoGen
Superfamily-SCOP	SSF52540	UniProtKB/TrEMBL
UniProt	A0A0G2K5H6_RAT	UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2019-11-08	AABR07028997.1				Symbol and Name status set to provisional	45752	PROVISIONAL

More on AABR07028997.1
	Alliance Gene
	Ensembl Gene
	JBrowse: rn6
	NCBI Genome Data Viewer

RGD Object Information
RGD ID:	15011427
Created:	2019-11-08
Species:	Rattus norvegicus
Last Modified:	2019-11-08
Status:	ACTIVE

RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.