AABR07028997.1 (null) - Rat Genome Database

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Gene: AABR07028997.1 (null) Rattus norvegicus
Analyze
Symbol: AABR07028997.1
Name:
RGD ID: 15011427
Description: Predicted to enable ATP binding activity.
Type: protein-coding
Latest Assembly: mRatBN7.2 Ensembl - mRatBN7.2 Assembly Ensembl
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2 Ensembl102,205,337 - 2,209,227 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.0 Ensembl101,741,216 - 1,744,647 (-)EnsemblRnor6.0rn6Rnor6.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.

Genomics


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 5
Low 3 42 39 23 19 23 8 11 74 35 36 11 8
Below cutoff 15 15 15

Sequence

Nucleotide Sequences

Reference Sequences
RefSeq Acc Id: ENSRNOT00000081886   ⟹   ENSRNOP00000073429
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl102,205,337 - 2,209,227 (-)Ensembl
Rnor_6.0 Ensembl101,741,216 - 1,744,647 (-)Ensembl
Protein Sequences
Reference Sequences
RefSeq Acc Id: ENSRNOP00000073429   ⟸   ENSRNOT00000081886
Protein Domains
ABC transporter

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-A0A0G2K5H6-F1-model_v2 AlphaFold A0A0G2K5H6 1-195 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSRNOG00000057978 Ensembl, UniProtKB/TrEMBL
Ensembl Protein ENSRNOP00000073429.2 UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000081886.2 UniProtKB/TrEMBL
Gene3D-CATH 3.40.50.300 UniProtKB/TrEMBL
InterPro ABC_transporter-like UniProtKB/TrEMBL
  P-loop_NTPase UniProtKB/TrEMBL
Pfam ABC_tran UniProtKB/TrEMBL
PhenoGen AABR07028997.1 PhenoGen
Superfamily-SCOP SSF52540 UniProtKB/TrEMBL
UniProt A0A0G2K5H6_RAT UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2019-11-08 AABR07028997.1        Symbol and Name status set to provisional 45752 PROVISIONAL