AABR07030425.1 (null) - Rat Genome Database

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Gene: AABR07030425.1 (null) Rattus norvegicus
Analyze
Symbol: AABR07030425.1
Name:
RGD ID: 15009938
Description: Predicted to be involved in translation.
Type: protein-coding
Latest Assembly: mRatBN7.2 Ensembl - mRatBN7.2 Assembly Ensembl
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2 Ensembl1082,181,224 - 82,181,547 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.0 Ensembl1085,130,141 - 85,130,464 (+)EnsemblRnor6.0rn6Rnor6.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process
translation  (IEA)

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.

Genomics


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium
Low 3 5 1 1 3 10 2
Below cutoff 2 7 12 2 7 2 4 5 35 16 22 3 4

Sequence

Nucleotide Sequences

Reference Sequences
RefSeq Acc Id: ENSRNOT00000088101   ⟹   ENSRNOP00000069182
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1082,181,224 - 82,181,547 (+)Ensembl
Rnor_6.0 Ensembl1085,130,141 - 85,130,464 (+)Ensembl
Protein Sequences
Ensembl Protein ENSRNOP00000069182.1
Reference Protein Sequences
RefSeq Acc Id: ENSRNOP00000069182   ⟸   ENSRNOT00000088101

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-A0A0G2JUQ2-F1-model_v2 AlphaFold A0A0G2JUQ2 1-107 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSRNOG00000056057 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000088101.2 UniProtKB/TrEMBL
Gene3D-CATH 3.30.1740.20 UniProtKB/TrEMBL
InterPro Ribosomal_eS26_CS UniProtKB/TrEMBL
  Ribosomal_S26e UniProtKB/TrEMBL
  Ribosomal_S26e_sf UniProtKB/TrEMBL
PANTHER 40S RIBOSOMAL PROTEIN S26 UniProtKB/TrEMBL
  PTHR12538 UniProtKB/TrEMBL
Pfam Ribosomal_S26e UniProtKB/TrEMBL
PhenoGen AABR07030425.1 PhenoGen
PROSITE RIBOSOMAL_S26E UniProtKB/TrEMBL
RatGTEx ENSRNOG00000056057 RatGTEx
UniProt A0A0G2JUQ2_RAT UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2019-11-08 AABR07030425.1        Symbol and Name status set to provisional 45752 PROVISIONAL