AABR07002783.1 (null) - Rat Genome Database

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Gene: AABR07002783.1 (null) Rattus norvegicus
Analyze
Symbol: AABR07002783.1
Name:
RGD ID: 15008815
Description:
Type: protein-coding
Latest Assembly: mRatBN7.2 Ensembl - mRatBN7.2 Assembly Ensembl
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2 Ensembl184,871,909 - 84,892,429 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.0 Ensembl184,842,087 - 84,856,309 (-)EnsemblRnor6.0rn6Rnor6.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

integumental system musculoskeletal system nervous system reproductive system appendage
High
Medium 2
Low 5
Below cutoff 2 2 5 5 2

Sequence

Nucleotide Sequences

Reference Sequences
RefSeq Acc Id: ENSRNOT00000079567   ⟹   ENSRNOP00000071319
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl184,871,909 - 84,892,429 (+)Ensembl
Rnor_6.0 Ensembl184,842,087 - 84,856,309 (-)Ensembl
Protein Sequences
Ensembl Protein ENSRNOP00000071319.2
Reference Protein Sequences
RefSeq Acc Id: ENSRNOP00000071319   ⟸   ENSRNOT00000079567

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-A0A0G2K063-F1-model_v2 AlphaFold A0A0G2K063 1-1140 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSRNOG00000054618 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000079567.2 UniProtKB/TrEMBL
Gene3D-CATH 2.130.10.10 UniProtKB/TrEMBL
InterPro Quinoprotein_ADH-like_supfam UniProtKB/TrEMBL
  WD40/YVTN_repeat-like_dom_sf UniProtKB/TrEMBL
  WD40_repeat UniProtKB/TrEMBL
  WD40_repeat_dom_sf UniProtKB/TrEMBL
PANTHER WD REPEAT-CONTAINING UniProtKB/TrEMBL
  WD REPEAT-CONTAINING PROTEIN 87 UniProtKB/TrEMBL
Pfam WD40 UniProtKB/TrEMBL
PhenoGen AABR07002783.1 PhenoGen
PROSITE WD_REPEATS_2 UniProtKB/TrEMBL
  WD_REPEATS_REGION UniProtKB/TrEMBL
RatGTEx ENSRNOG00000054618 RatGTEx
SMART WD40 UniProtKB/TrEMBL
Superfamily-SCOP SSF50978 UniProtKB/TrEMBL
  SSF50998 UniProtKB/TrEMBL
UniProt A0A0G2K063_RAT UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2019-11-08 AABR07002783.1        Symbol and Name status set to provisional 45752 PROVISIONAL