AABR07051565.1 (null) - Rat Genome Database

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Gene: AABR07051565.1 (null) Rattus norvegicus
Analyze
Symbol: AABR07051565.1
Name:
RGD ID: 15007729
Description: Predicted to be part of immunoglobulin complex.
Type: protein-coding
Latest Assembly: mRatBN7.2 Ensembl - mRatBN7.2 Assembly Ensembl
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2 Ensembl4101,762,864 - 101,763,728 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.0 Ensembl317,180,411 - 17,181,239 (+)EnsemblRnor6.0rn6Rnor6.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.

Genomics


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system reproductive system respiratory system appendage
High
Medium 1 3
Low 2 5 14 5
Below cutoff 1 5 3 1 3 2 2 2 1 4 2

Sequence

Nucleotide Sequences

Reference Sequences
RefSeq Acc Id: ENSRNOT00000058260   ⟹   ENSRNOP00000055060
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl4101,762,864 - 101,763,728 (-)Ensembl
Rnor_6.0 Ensembl317,180,411 - 17,181,239 (+)Ensembl
Protein Sequences
Ensembl Protein ENSRNOP00000055060.4
Reference Protein Sequences
RefSeq Acc Id: ENSRNOP00000055060   ⟸   ENSRNOT00000058260
Protein Domains
Ig-like

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-F1LW26-F1-model_v2 AlphaFold F1LW26 1-120 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSRNOG00000053188 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000058260.5 UniProtKB/TrEMBL
Gene3D-CATH 2.60.40.10 UniProtKB/TrEMBL
InterPro Ig-like_dom UniProtKB/TrEMBL
  Ig-like_dom_sf UniProtKB/TrEMBL
  Ig-like_fold UniProtKB/TrEMBL
  Ig_sub UniProtKB/TrEMBL
  Ig_V-set UniProtKB/TrEMBL
PANTHER IG KAPPA CHAIN V-III REGION 50S10.1-RELATED UniProtKB/TrEMBL
  IMMUNOGLOBULIN LIGHT CHAIN UniProtKB/TrEMBL
Pfam V-set UniProtKB/TrEMBL
PhenoGen AABR07051565.1 PhenoGen
PROSITE IG_LIKE UniProtKB/TrEMBL
RatGTEx ENSRNOG00000053188 RatGTEx
SMART IGv UniProtKB/TrEMBL
  SM00409 UniProtKB/TrEMBL
Superfamily-SCOP SSF48726 UniProtKB/TrEMBL
UniProt F1LW26_RAT UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2019-11-08 AABR07051565.1        Symbol and Name status set to provisional 45752 PROVISIONAL