AABR07070085.1 (null) - Rat Genome Database

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Gene: AABR07070085.1 (null) Rattus norvegicus
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Symbol: AABR07070085.1
Name:
RGD ID: 15007012
Description: Predicted to enable several functions, including amyloid-beta binding activity; cholesterol binding activity; and signaling receptor binding activity. Predicted to be involved in several processes, including lipid homeostasis; lipid transport; and regulation of Rho protein signal transduction. Predicted to be located in endocytic vesicle. Predicted to be part of spherical high-density lipoprotein particle and very-low-density lipoprotein particle.
Type: protein-coding
Latest Assembly: mRatBN7.2 Ensembl - mRatBN7.2 Assembly Ensembl
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.0 Ensembl850,526,583 - 50,526,843 (-)EnsemblRnor6.0rn6Rnor6.0


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process
cholesterol efflux  (IEA)
cholesterol homeostasis  (IEA)
cholesterol import  (IEA)
cholesterol metabolic process  (IEA)
G protein-coupled receptor signaling pathway  (IEA)
high-density lipoprotein particle assembly  (IEA)
high-density lipoprotein particle remodeling  (IEA)
integrin-mediated signaling pathway  (IEA)
intermembrane lipid transfer  (IEA)
negative chemotaxis  (IEA)
negative regulation of cell adhesion molecule production  (IEA)
negative regulation of cytokine production involved in immune response  (IEA)
negative regulation of heterotypic cell-cell adhesion  (IEA)
negative regulation of inflammatory response  (IEA)
negative regulation of interleukin-1 beta production  (IEA)
negative regulation of tumor necrosis factor-mediated signaling pathway  (IEA)
negative regulation of very-low-density lipoprotein particle remodeling  (IEA)
peptidyl-methionine modification  (IEA)
phosphatidylcholine biosynthetic process  (IEA)
phospholipid efflux  (IEA)
phospholipid homeostasis  (IEA)
positive regulation of cholesterol efflux  (IEA)
positive regulation of cholesterol metabolic process  (IEA)
positive regulation of CoA-transferase activity  (IEA)
positive regulation of hydrolase activity  (IEA)
positive regulation of phagocytosis  (IEA)
positive regulation of phospholipid efflux  (IEA)
positive regulation of Rho protein signal transduction  (IEA)
positive regulation of stress fiber assembly  (IEA)
positive regulation of substrate adhesion-dependent cell spreading  (IEA)
protein oxidation  (IEA)
protein stabilization  (IEA)
regulation of Cdc42 protein signal transduction  (IEA)
reverse cholesterol transport  (IEA)
triglyceride homeostasis  (IEA)
vitamin transport  (IEA)

Cellular Component

References

Genomics


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

endocrine system exocrine system hepatobiliary system reproductive system
High
Medium
Low 28 28 28
Below cutoff 2 2 2 1

Sequence

Nucleotide Sequences

Reference Sequences
RefSeq Acc Id: ENSRNOT00000092188   ⟹   ENSRNOP00000068933
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl850,526,583 - 50,526,843 (-)Ensembl
Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-A0A0G2JU23-F1-model_v2 AlphaFold A0A0G2JU23 1-87 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSRNOG00000052246 Ensembl, UniProtKB/TrEMBL
Ensembl Protein ENSRNOP00000068933 UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000092188 UniProtKB/TrEMBL
PhenoGen AABR07070085.1 PhenoGen
UniProt A0A0G2JU23_RAT UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2019-11-08 AABR07070085.1        Symbol and Name status set to provisional 45752 PROVISIONAL