AABR07015507.1 (null) - Rat Genome Database

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Gene: AABR07015507.1 (null) Rattus norvegicus
Analyze
Symbol: AABR07015507.1
Name:
RGD ID: 15006223
Description: Predicted to be involved in mitochondrial cytochrome c oxidase assembly. Predicted to be located in membrane and mitochondrion.
Type: processed_transcript
Latest Assembly: mRatBN7.2 Ensembl - mRatBN7.2 Assembly Ensembl
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.0 Ensembl1460,057,493 - 60,069,864 (-)EnsemblRnor6.0rn6Rnor6.0


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
membrane  (IEA)
mitochondrion  (IEA)

References

Genomics


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 3 43 57 41 19 41 8 11 74 35 41 11 8
Low
Below cutoff

Sequence

Nucleotide Sequences

RefSeq Acc Id: ENSRNOT00000076276
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl1460,060,072 - 60,069,864 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000084451
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1457,711,307 - 57,722,681 (-)Ensembl
Rnor_6.0 Ensembl1460,057,524 - 60,058,128 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000091794
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1457,711,309 - 57,722,648 (-)Ensembl
Rnor_6.0 Ensembl1460,057,493 - 60,060,064 (-)Ensembl
Protein Sequences
Ensembl Protein ENSRNOP00000081190.1
  ENSRNOP00000088034.1

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSRNOG00000051190 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000084451.2 UniProtKB/TrEMBL
  ENSRNOT00000091794.2 UniProtKB/TrEMBL
InterPro SMIM20 UniProtKB/TrEMBL
PANTHER PTHR34923 UniProtKB/TrEMBL
  SMALL INTEGRAL MEMBRANE PROTEIN 20 UniProtKB/TrEMBL
Pfam DUF4538 UniProtKB/TrEMBL
PhenoGen AABR07015507.1 PhenoGen
RatGTEx ENSRNOG00000051190 RatGTEx
UniProt A0A8I5ZUJ5_RAT UniProtKB/TrEMBL
  A0A8I6GFR3_RAT UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2019-11-08 AABR07015507.1        Symbol and Name status set to provisional 45752 PROVISIONAL