AABR07053516.1 (null) - Rat Genome Database
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Pathways
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Gene: AABR07053516.1 (null) Rattus norvegicus
Analyze
Symbol: AABR07053516.1
Name:
RGD ID: 15005990
Description: INVOLVED IN histamine secretion by mast cell (inferred); FOUND IN adherens junction (inferred); azurophil granule (inferred); mitochondrion (inferred)
Type: protein-coding
Latest Assembly: Rnor_6.0 Ensembl - RGSC Genome Assembly v6.0 Ensembl
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.0 Ensembl3112,346,627 - 112,361,216 (+)EnsemblRnor6.0rn6Rnor6.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
1. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.

Genomics


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 3 43 57 41 19 41 8 11 74 35 41 11 8
Low
Below cutoff

Sequence

Nucleotide Sequences

Reference Sequences
RefSeq Acc Id: ENSRNOT00000074392   ⟹   ENSRNOP00000064401
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl3112,346,627 - 112,361,216 (+)Ensembl
Protein Sequences
Reference Sequences
RefSeq Acc Id: ENSRNOP00000064401   ⟸   ENSRNOT00000074392
Protein Domains
t-SNARE coiled-coil homology

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSRNOG00000050552 Ensembl, UniProtKB/TrEMBL
Ensembl Protein ENSRNOP00000064401 UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000074392 UniProtKB/TrEMBL
InterPro SNAP-25 UniProtKB/TrEMBL
  T_SNARE_dom UniProtKB/TrEMBL
Pfam SNAP-25 UniProtKB/TrEMBL
PhenoGen AABR07053516.1 PhenoGen
PROSITE T_SNARE UniProtKB/TrEMBL
SMART t_SNARE UniProtKB/TrEMBL
UniProt M0R4V3_RAT UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2019-11-08 AABR07053516.1        Symbol and Name status set to provisional 45752 PROVISIONAL