AABR07051534.1 (null) - Rat Genome Database

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Gene: AABR07051534.1 (null) Rattus norvegicus
Analyze
Symbol: AABR07051534.1
Name:
RGD ID: 15005811
Description:
Type: protein-coding
Latest Assembly: mRatBN7.2 Ensembl - mRatBN7.2 Assembly Ensembl
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.0 Ensembl316,571,602 - 16,572,182 (+)EnsemblRnor6.0rn6Rnor6.0


References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:27
Count of miRNA genes:25
Interacting mature miRNAs:25
Transcripts:ENSRNOT00000048351
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system musculoskeletal system renal system reproductive system respiratory system
High
Medium 1 4 6
Low 2 4 13 5
Below cutoff 1 2 2 2 1 3 2 3

Sequence

Nucleotide Sequences

Reference Sequences
RefSeq Acc Id: ENSRNOT00000048351   ⟹   ENSRNOP00000042930
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl316,571,602 - 16,572,182 (+)Ensembl
Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-F1M0B7-F1-model_v2 AlphaFold F1M0B7 1-116 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSRNOG00000049755 Ensembl
PhenoGen AABR07051534.1 PhenoGen
RatGTEx ENSRNOG00000049755 RatGTEx


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2019-11-08 AABR07051534.1        Symbol and Name status set to provisional 45752 PROVISIONAL