AABR07017733.1 (null) - Rat Genome Database

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Pathways
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Gene: AABR07017733.1 (null) Rattus norvegicus
Analyze
Symbol: AABR07017733.1
Name:
RGD ID: 15005777
Description: ENCODES a protein that exhibits peptide antigen binding (inferred); FOUND IN T cell receptor complex (inferred)
Type: protein-coding
Latest Assembly: mRatBN7.2 Ensembl - mRatBN7.2 Assembly Ensembl
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2 Ensembl1526,209,969 - 26,211,119 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.0 Ensembl1530,413,488 - 30,415,108 (+)EnsemblRnor6.0rn6Rnor6.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:92
Count of miRNA genes:72
Interacting mature miRNAs:73
Transcripts:ENSRNOT00000071781
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system nervous system renal system reproductive system respiratory system
High
Medium
Low 2 8 16 49 3 1
Below cutoff 1 1 2 12 1 10 2

Sequence

Nucleotide Sequences

Reference Sequences
RefSeq Acc Id: ENSRNOT00000071781   ⟹   ENSRNOP00000065986
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1526,209,969 - 26,211,119 (+)Ensembl
Rnor_6.0 Ensembl1530,413,488 - 30,415,108 (+)Ensembl
Protein Sequences
Ensembl Protein ENSRNOP00000065986.3
Reference Protein Sequences
RefSeq Acc Id: ENSRNOP00000065986   ⟸   ENSRNOT00000071781
Protein Domains
Ig-like

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-M0R926-F1-model_v2 AlphaFold M0R926 1-117 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSRNOG00000049583 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000071781.3 UniProtKB/TrEMBL
Gene3D-CATH 2.60.40.10 UniProtKB/TrEMBL
InterPro Ig-like_dom UniProtKB/TrEMBL
  Ig-like_dom_sf UniProtKB/TrEMBL
  Ig-like_fold UniProtKB/TrEMBL
  Ig_sub UniProtKB/TrEMBL
  Ig_V-set UniProtKB/TrEMBL
PANTHER IG-LIKE DOMAIN-CONTAINING PROTEIN UniProtKB/TrEMBL
  T CELL RECEPTOR ALPHA VARIABLE 1-2 UniProtKB/TrEMBL
Pfam V-set UniProtKB/TrEMBL
PhenoGen AABR07017733.1 PhenoGen
PROSITE IG_LIKE UniProtKB/TrEMBL
RatGTEx ENSRNOG00000049583 RatGTEx
SMART IGv UniProtKB/TrEMBL
  SM00409 UniProtKB/TrEMBL
Superfamily-SCOP SSF48726 UniProtKB/TrEMBL
UniProt M0R926_RAT UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2019-11-08 AABR07017733.1        Symbol and Name status set to provisional 45752 PROVISIONAL