AABR07035501.1 (null) - Rat Genome Database

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Gene: AABR07035501.1 (null) Rattus norvegicus
Analyze
Symbol: AABR07035501.1
Name:
RGD ID: 15005705
Description: Predicted to enable transmembrane signaling receptor activity. Predicted to be involved in regulation of T cell activation and regulation of T cell migration.
Type: protein-coding
Latest Assembly: mRatBN7.2 Ensembl - mRatBN7.2 Assembly Ensembl
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2 Ensembl1216,100,317 - 16,105,431 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.0 Ensembl1218,220,104 - 18,227,991 (-)EnsemblRnor6.0rn6Rnor6.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:25
Count of miRNA genes:25
Interacting mature miRNAs:25
Transcripts:ENSRNOT00000072986
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

reproductive system
High
Medium 7
Low
Below cutoff 1

Sequence

Nucleotide Sequences

RefSeq Acc Id: ENSRNOT00000072986   ⟹   ENSRNOP00000065824
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1216,100,317 - 16,105,431 (-)Ensembl
Rnor_6.0 Ensembl1218,220,104 - 18,227,991 (-)Ensembl
Protein Sequences
Ensembl Protein ENSRNOP00000065824.3
RefSeq Acc Id: ENSRNOP00000065824   ⟸   ENSRNOT00000072986

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSRNOG00000049220 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000072986.3 UniProtKB/TrEMBL
InterPro Leukosialin UniProtKB/TrEMBL
PANTHER LEUKOSIALIN UniProtKB/TrEMBL
  PTHR35265 UniProtKB/TrEMBL
PhenoGen AABR07035501.1 PhenoGen
RatGTEx ENSRNOG00000049220 RatGTEx
UniProt M0R8M5_RAT UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2019-11-08 AABR07035501.1        Symbol and Name status set to provisional 45752 PROVISIONAL