AC109542.1 (null) - Rat Genome Database

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Gene: AC109542.1 (null) Rattus norvegicus
Analyze
Symbol: AC109542.1
Name:
RGD ID: 15005550
Description: Predicted to enable DNA binding activity.
Type: protein-coding
Latest Assembly: mRatBN7.2 Ensembl - mRatBN7.2 Assembly Ensembl
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2 Ensembl1196,570,210 - 196,573,077 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.0 Ensembl1214,452,127 - 214,455,039 (-)EnsemblRnor6.0rn6Rnor6.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.

Genomics


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
7 6 29 36 33 20 6 20 6 61 24 17 10 23 13

Sequence

Nucleotide Sequences

Ensembl Acc Id: ENSRNOT00000071028   ⟹   ENSRNOP00000066905
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1196,570,210 - 196,573,077 (-)Ensembl
Rnor_6.0 Ensembl1214,452,127 - 214,455,039 (-)Ensembl
Protein Sequences
Ensembl Protein ENSRNOP00000066905.3
Ensembl Acc Id: ENSRNOP00000066905   ⟸   ENSRNOT00000071028

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-M0RBH0-F1-model_v2 AlphaFold M0RBH0 1-322 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSRNOG00000048562 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000071028.3 UniProtKB/TrEMBL
Gene3D-CATH Homeodomain-like UniProtKB/TrEMBL
InterPro RNA_pol_su_RPB10 UniProtKB/TrEMBL
  RNA_pol_suN_Zn-BS UniProtKB/TrEMBL
  RNAP_N/Rpb10 UniProtKB/TrEMBL
PANTHER DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC5 UniProtKB/TrEMBL
  PTHR23431 UniProtKB/TrEMBL
Pfam RNA_pol_N UniProtKB/TrEMBL
PhenoGen AC109542.1 PhenoGen
PROSITE RNA_POL_N_8KD UniProtKB/TrEMBL
RatGTEx ENSRNOG00000048562 RatGTEx
Superfamily-SCOP SSF46924 UniProtKB/TrEMBL
UniProt M0RBH0_RAT UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2019-11-08 AC109542.1        Symbol and Name status set to provisional 45752 PROVISIONAL