AABR07027368.1 (null) - Rat Genome Database

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Gene: AABR07027368.1 (null) Rattus norvegicus
Analyze
Symbol: AABR07027368.1
Name:
RGD ID: 15005385
Description: Predicted to enable protein heterodimerization activity.
Type: protein-coding
Latest Assembly: mRatBN7.2 Ensembl - mRatBN7.2 Assembly Ensembl
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2 Ensembl1726,135,927 - 26,136,235 (+)Ensembl
Rnor_6.0 Ensembl1726,772,096 - 26,772,732 (+)EnsemblRnor6.0rn6Rnor6.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
1. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:49
Count of miRNA genes:46
Interacting mature miRNAs:48
Transcripts:ENSRNOT00000071866
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

endocrine system exocrine system hemolymphoid system hepatobiliary system nervous system reproductive system
High
Medium
Low
Below cutoff 2 1 1 1 1 2

Sequence

Nucleotide Sequences

Reference Sequences
RefSeq Acc Id: ENSRNOT00000071866   ⟹   ENSRNOP00000065674
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1726,135,927 - 26,136,235 (+)Ensembl
Rnor_6.0 Ensembl1726,772,096 - 26,772,732 (+)Ensembl
Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-M0R882-F1-model_v2 AlphaFold M0R882 1-185 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSRNOG00000047910 Ensembl, UniProtKB/TrEMBL
Ensembl Protein ENSRNOP00000065674 UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000071866 UniProtKB/TrEMBL
Gene3D-CATH 1.10.20.10 UniProtKB/TrEMBL
InterPro Histone-fold UniProtKB/TrEMBL
PhenoGen AABR07027368.1 PhenoGen
Superfamily-SCOP SSF47113 UniProtKB/TrEMBL
UniProt M0R882_RAT UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2019-11-08 AABR07027368.1        Symbol and Name status set to provisional 45752 PROVISIONAL