AABR07005775.1 (null) - Rat Genome Database

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Gene: AABR07005775.1 (null) Rattus norvegicus
Analyze
Symbol: AABR07005775.1
Name:
RGD ID: 15005182
Description: Predicted to enable several functions, including ATP hydrolysis activity; ion binding activity; and protein homodimerization activity. Predicted to be involved in several processes, including calcium ion transport; intracellular calcium ion homeostasis; and maintenance of mitochondrion location. Predicted to be located in mitochondrion and sarcoplasmic reticulum membrane.
Type: protein-coding
Latest Assembly: mRatBN7.2 Ensembl - mRatBN7.2 Assembly Ensembl
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.0 Ensembl1197,856,903 - 197,858,016 (-)EnsemblRnor6.0rn6Rnor6.0


References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.

Genomics


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High 8 11 8
Medium 10 7 4 4 4 6 7
Low 2 33 24 11 15 11 23 20 28 4
Below cutoff 1 16 16 16 17 14 7

Sequence

Nucleotide Sequences

RefSeq Acc Id: ENSRNOT00000074778   ⟹   ENSRNOP00000067246
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1181,027,036 - 181,044,657 (-)Ensembl
Rnor_6.0 Ensembl1197,856,903 - 197,858,016 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000098341   ⟹   ENSRNOP00000076411
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1181,026,608 - 181,044,838 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000103650   ⟹   ENSRNOP00000082916
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1181,026,608 - 181,044,834 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000106738   ⟹   ENSRNOP00000091865
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1181,026,608 - 181,044,834 (-)Ensembl
Protein Sequences
Ensembl Protein ENSRNOP00000076411.1
  ENSRNOP00000082916.1
RefSeq Acc Id: ENSRNOP00000067246   ⟸   ENSRNOT00000074778
RefSeq Acc Id: ENSRNOP00000091865   ⟸   ENSRNOT00000106738
RefSeq Acc Id: ENSRNOP00000076411   ⟸   ENSRNOT00000098341
RefSeq Acc Id: ENSRNOP00000082916   ⟸   ENSRNOT00000103650
Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-M0RCD2-F1-model_v2 AlphaFold M0RCD2 1-181 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSRNOG00000047124 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000098341.1 UniProtKB/TrEMBL
  ENSRNOT00000103650.1 UniProtKB/TrEMBL
Gene3D-CATH 3.40.1110.10 UniProtKB/TrEMBL
  3.40.50.1000 UniProtKB/TrEMBL
  Calcium-transporting ATPase, cytoplasmic transduction domain A UniProtKB/TrEMBL
  Calcium-transporting ATPase, transmembrane domain UniProtKB/TrEMBL
InterPro ATPase_P-typ_cation-transptr_C UniProtKB/TrEMBL
  ATPase_P-typ_cation-transptr_N UniProtKB/TrEMBL
  ATPase_P-typ_cyto_dom_N UniProtKB/TrEMBL
  ATPase_P-typ_P_site UniProtKB/TrEMBL
  ATPase_P-typ_TM_dom_sf UniProtKB/TrEMBL
  ATPase_P-typ_transduc_dom_A_sf UniProtKB/TrEMBL
  HAD-like_sf UniProtKB/TrEMBL
  HAD_sf UniProtKB/TrEMBL
  P-type_ATPase_IIA UniProtKB/TrEMBL
  P_typ_ATPase UniProtKB/TrEMBL
  P_typ_ATPase_HD_dom UniProtKB/TrEMBL
PANTHER CALCIUM-TRANSPORTING ATPASE UniProtKB/TrEMBL
  SARCOPLASMIC/ENDOPLASMIC RETICULUM CALCIUM ATPASE 1 UniProtKB/TrEMBL
Pfam Cation_ATPase UniProtKB/TrEMBL
  Cation_ATPase_C UniProtKB/TrEMBL
  Cation_ATPase_N UniProtKB/TrEMBL
  E1-E2_ATPase UniProtKB/TrEMBL
  Hydrolase UniProtKB/TrEMBL
PhenoGen AABR07005775.1 PhenoGen
PRINTS CATATPASE UniProtKB/TrEMBL
  HATPASE UniProtKB/TrEMBL
PROSITE ATPASE_E1_E2 UniProtKB/TrEMBL
RatGTEx ENSRNOG00000047124 RatGTEx
SMART Cation_ATPase_N UniProtKB/TrEMBL
Superfamily-SCOP SSF56784 UniProtKB/TrEMBL
  SSF81653 UniProtKB/TrEMBL
  SSF81660 UniProtKB/TrEMBL
  SSF81665 UniProtKB/TrEMBL
UniProt A0A8I5XUV7_RAT UniProtKB/TrEMBL
  A0A8I5ZYV5_RAT UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2019-11-08 AABR07005775.1        Symbol and Name status set to provisional 45752 PROVISIONAL