AABR07008242.1 (null) - Rat Genome Database

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Gene: AABR07008242.1 (null) Rattus norvegicus
Analyze
Symbol: AABR07008242.1
Name:
RGD ID: 15005090
Description: ENCODES a protein that exhibits metal ion binding (inferred); INVOLVED IN apoptotic process (inferred); protein tetramerization (inferred); FOUND IN cytoplasm (inferred); nucleus (inferred)
Type: protein-coding
Latest Assembly: Rnor_6.0 Ensembl - RGSC Genome Assembly v6.0 Ensembl
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.0 Ensembl249,382,415 - 49,384,101 (-)EnsemblRnor6.0rn6Rnor6.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
cytoplasm  (IEA)
nucleus  (IEA)

References

References - curated
1. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.

Genomics


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

circulatory system musculoskeletal system
High
Medium
Low
Below cutoff 1 1

Sequence

Nucleotide Sequences

Reference Sequences
RefSeq Acc Id: ENSRNOT00000072449   ⟹   ENSRNOP00000064177
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl249,382,415 - 49,384,101 (-)Ensembl
Protein Sequences
Reference Sequences
RefSeq Acc Id: ENSRNOP00000064177   ⟸   ENSRNOT00000072449
Protein Domains
P53   P53_tetramer

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSRNOG00000046657 Ensembl, UniProtKB/TrEMBL
Ensembl Protein ENSRNOP00000064177 UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000072449 UniProtKB/TrEMBL
Gene3D-CATH 2.60.40.720 UniProtKB/TrEMBL
  4.10.170.10 UniProtKB/TrEMBL
InterPro p53-like_TF_DNA-bd UniProtKB/TrEMBL
  p53/RUNT-type_TF_DNA-bd_sf UniProtKB/TrEMBL
  p53_DNA-bd UniProtKB/TrEMBL
  p53_tetramer_sf UniProtKB/TrEMBL
  p53_tetrameristn UniProtKB/TrEMBL
  p53_tumour_suppressor UniProtKB/TrEMBL
PANTHER PTHR11447 UniProtKB/TrEMBL
Pfam P53 UniProtKB/TrEMBL
  P53_tetramer UniProtKB/TrEMBL
PhenoGen AABR07008242.1 PhenoGen
PRINTS P53SUPPRESSR UniProtKB/TrEMBL
PROSITE P53 UniProtKB/TrEMBL
Superfamily-SCOP SSF47719 UniProtKB/TrEMBL
  SSF49417 UniProtKB/TrEMBL
UniProt M0R497_RAT UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2019-11-08 AABR07008242.1        Symbol and Name status set to provisional 45752 PROVISIONAL