AABR07006049.1 (null) - Rat Genome Database
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Pathways
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Gene: AABR07006049.1 (null) Rattus norvegicus
Analyze
Symbol: AABR07006049.1
Name:
RGD ID: 15005087
Description: FOUND IN keratin filament (inferred)
Type: protein-coding
Latest Assembly: Rnor_6.0 Ensembl - RGSC Genome Assembly v6.0 Ensembl
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.0 Ensembl1215,057,617 - 215,423,099 (-)EnsemblRnor6.0rn6Rnor6.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:56
Count of miRNA genes:26
Interacting mature miRNAs:28
Transcripts:ENSRNOT00000042047, ENSRNOT00000068147
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system endocrine system hemolymphoid system integumental system musculoskeletal system reproductive system respiratory system appendage
High
Medium
Low 6
Below cutoff 1 2 4 2 2 1 4 2

Sequence

Nucleotide Sequences

Reference Sequences
RefSeq Acc Id: ENSRNOT00000027259   ⟹   ENSRNOP00000027259
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl1215,329,668 - 215,423,099 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000042047   ⟹   ENSRNOP00000042552
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl1215,329,806 - 215,330,492 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000064050   ⟹   ENSRNOP00000063635
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl1215,329,668 - 215,350,161 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000068147   ⟹   ENSRNOP00000060547
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl1215,057,677 - 215,330,492 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000081144   ⟹   ENSRNOP00000073310
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl1215,057,617 - 215,350,161 (-)Ensembl
Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSRNOG00000046649 Ensembl, UniProtKB/TrEMBL
Ensembl Protein ENSRNOP00000027259 UniProtKB/TrEMBL
  ENSRNOP00000042552 UniProtKB/TrEMBL
  ENSRNOP00000060547 UniProtKB/TrEMBL
  ENSRNOP00000063635 UniProtKB/TrEMBL
  ENSRNOP00000073310 UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000027259 UniProtKB/TrEMBL
  ENSRNOT00000042047 UniProtKB/TrEMBL
  ENSRNOT00000064050 UniProtKB/TrEMBL
  ENSRNOT00000068147 UniProtKB/TrEMBL
  ENSRNOT00000081144 UniProtKB/TrEMBL
InterPro KAP UniProtKB/TrEMBL
PANTHER PTHR23262 UniProtKB/TrEMBL
Pfam Keratin_B2_2 UniProtKB/TrEMBL
PhenoGen AABR07006049.1 PhenoGen
UniProt A0A0G2K565_RAT UniProtKB/TrEMBL
  D3ZQU5_RAT UniProtKB/TrEMBL
  D3ZWG1_RAT UniProtKB/TrEMBL
  F1LXZ0_RAT UniProtKB/TrEMBL
  F1M4R9_RAT UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2019-11-08 AABR07006049.1        Symbol and Name status set to provisional 45752 PROVISIONAL