AABR07040686.1 (null) - Rat Genome Database

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Gene: AABR07040686.1 (null) Rattus norvegicus
Analyze
Symbol: AABR07040686.1
Name:
RGD ID: 15004856
Description: ENCODES a protein that exhibits protein heterodimerization activity (inferred); FOUND IN nucleosome (inferred)
Type: protein-coding
Latest Assembly: Rnor_6.0 Ensembl - RGSC Genome Assembly v6.0 Ensembl
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.0 EnsemblX107,584,653 - 107,585,312 (+)EnsemblRnor6.0rn6Rnor6.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
nucleosome  (IEA)

Molecular Function

References

References - curated
1. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:120
Count of miRNA genes:100
Interacting mature miRNAs:105
Transcripts:ENSRNOT00000072037
Prediction methods:Microtar, Miranda, Pita, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

endocrine system hemolymphoid system nervous system reproductive system
High
Medium
Low
Below cutoff 1 1 1 3

Sequence

Nucleotide Sequences

Reference Sequences
RefSeq Acc Id: ENSRNOT00000072037   ⟹   ENSRNOP00000064494
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 EnsemblX107,584,653 - 107,585,312 (+)Ensembl
Protein Sequences
Reference Sequences
RefSeq Acc Id: ENSRNOP00000064494   ⟸   ENSRNOT00000072037
Protein Domains
Histone

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSRNOG00000045618 Ensembl, UniProtKB/TrEMBL
Ensembl Protein ENSRNOP00000064494 UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000072037 UniProtKB/TrEMBL
Gene3D-CATH 1.10.20.10 UniProtKB/TrEMBL
InterPro Histone-fold UniProtKB/TrEMBL
  Histone_H2A/H2B/H3 UniProtKB/TrEMBL
  Histone_H2B UniProtKB/TrEMBL
PANTHER PTHR23428 UniProtKB/TrEMBL
Pfam Histone UniProtKB/TrEMBL
PhenoGen AABR07040686.1 PhenoGen
PRINTS HISTONEH2B UniProtKB/TrEMBL
SMART H2B UniProtKB/TrEMBL
Superfamily-SCOP SSF47113 UniProtKB/TrEMBL
UniProt M0R538_RAT UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2019-11-08 AABR07040686.1        Symbol and Name status set to provisional 45752 PROVISIONAL