AABR07059308.1 (null) - Rat Genome Database

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Gene: AABR07059308.1 (null) Rattus norvegicus
Analyze
Symbol: AABR07059308.1
Name:
RGD ID: 15004647
Description: Predicted to be involved in cell adhesion; cell surface receptor signaling pathway; and immune response. Predicted to be located in Golgi apparatus and apical plasma membrane. Predicted to be integral component of membrane.
Type: protein-coding
Latest Assembly: Rnor_6.0 Ensembl - RGSC Genome Assembly v6.0 Ensembl
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.0 Ensembl414,071,507 - 14,113,255 (+)EnsemblRnor6.0rn6Rnor6.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

References - curated
1. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:16
Count of miRNA genes:14
Interacting mature miRNAs:15
Transcripts:ENSRNOT00000066224
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 16 16 9 16
Low 31 35 20 10 20 5 5 4 20 11 5
Below cutoff 2 12 6 5 5 3 5 49 28 18 3

Sequence

Nucleotide Sequences

Reference Sequences
RefSeq Acc Id: ENSRNOT00000075962   ⟹   ENSRNOP00000068147
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl414,071,507 - 14,109,104 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000076349   ⟹   ENSRNOP00000068364
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl414,109,864 - 14,113,255 (+)Ensembl
Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSRNOG00000043176 Ensembl, UniProtKB/TrEMBL
Ensembl Protein ENSRNOP00000068147 UniProtKB/TrEMBL
  ENSRNOP00000068364 UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000075962 UniProtKB/TrEMBL
  ENSRNOT00000076349 UniProtKB/TrEMBL
InterPro CD36/SCARB1/SNMP1 UniProtKB/TrEMBL
  CD36_chordates UniProtKB/TrEMBL
  CD36_fam UniProtKB/TrEMBL
PANTHER PTHR11923 UniProtKB/TrEMBL
  PTHR11923:SF12 UniProtKB/TrEMBL
Pfam CD36 UniProtKB/TrEMBL
PhenoGen AABR07059308.1 PhenoGen
PRINTS CD36ANTIGEN UniProtKB/TrEMBL
  CD36FAMILY UniProtKB/TrEMBL
UniProt A0A096MJJ0_RAT UniProtKB/TrEMBL
  A0A096MK34_RAT UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2019-11-08 AABR07059308.1        Symbol and Name status set to provisional 45752 PROVISIONAL