AC112018.1 (null) - Rat Genome Database

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Gene: AC112018.1 (null) Rattus norvegicus
Analyze
Symbol: AC112018.1
Name:
RGD ID: 15004620
Description: Predicted to be involved in cell division and positive regulation of cyclin-dependent protein serine/threonine kinase activity.
Type: protein-coding
Latest Assembly: mRatBN7.2 Ensembl - mRatBN7.2 Assembly Ensembl
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2 Ensembl4144,220,751 - 144,220,990 (-)Ensembl
Rnor_6.0 Ensembl4142,970,009 - 142,970,245 (-)EnsemblRnor6.0rn6Rnor6.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
1. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:50
Count of miRNA genes:43
Interacting mature miRNAs:46
Transcripts:ENSRNOT00000067815
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

circulatory system endocrine system nervous system reproductive system respiratory system
High
Medium
Low 1 11 3
Below cutoff 1 6 2 2

Sequence

Nucleotide Sequences

Reference Sequences
RefSeq Acc Id: ENSRNOT00000067815   ⟹   ENSRNOP00000062461
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl4144,220,751 - 144,220,990 (-)Ensembl
Rnor_6.0 Ensembl4142,970,009 - 142,970,245 (-)Ensembl
Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSRNOG00000042804 Ensembl, UniProtKB/TrEMBL
Ensembl Protein ENSRNOP00000062461 UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000067815 UniProtKB/TrEMBL
Gene3D-CATH 3.30.170.10 UniProtKB/TrEMBL
InterPro Cyclin-dep_kinase_reg-sub UniProtKB/TrEMBL
  Cyclin-dep_kinase_reg-sub_sf UniProtKB/TrEMBL
Pfam CKS UniProtKB/TrEMBL
PhenoGen AC112018.1 PhenoGen
PRINTS CYCLINKINASE UniProtKB/TrEMBL
PROSITE CKS_2 UniProtKB/TrEMBL
SMART CKS UniProtKB/TrEMBL
Superfamily-SCOP SSF55637 UniProtKB/TrEMBL
UniProt D3ZGT4_RAT UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2019-11-08 AC112018.1        Symbol and Name status set to provisional 45752 PROVISIONAL