AABR07044583.2 (null) - Rat Genome Database

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Pathways
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Gene: AABR07044583.2 (null) Rattus norvegicus
Analyze
Symbol: AABR07044583.2
Name:
RGD ID: 15004589
Description: Predicted to be involved in animal organ development and cell differentiation. Predicted to be located in keratin filament.
Type: protein-coding
Latest Assembly: mRatBN7.2 Ensembl - mRatBN7.2 Assembly Ensembl
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2 Ensembl2010,840,914 - 10,841,681 (-)Ensembl
Rnor_6.0 Ensembl2011,530,134 - 11,538,998 (-)EnsemblRnor6.0rn6Rnor6.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:97
Count of miRNA genes:83
Interacting mature miRNAs:89
Transcripts:ENSRNOT00000066482
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

circulatory system hemolymphoid system integumental system musculoskeletal system nervous system reproductive system respiratory system appendage
High
Medium
Low 3
Below cutoff 4 4 1 1 4 15 2 1

Sequence

Nucleotide Sequences

Reference Sequences
RefSeq Acc Id: ENSRNOT00000066482   ⟹   ENSRNOP00000060984
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl2010,840,914 - 10,841,681 (-)Ensembl
Rnor_6.0 Ensembl2011,530,134 - 11,538,998 (-)Ensembl
Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D3ZNY7-F1-model_v2 AlphaFold D3ZNY7 1-284 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSRNOG00000042329 Ensembl, UniProtKB/TrEMBL
Ensembl Protein ENSRNOP00000060984 UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000066482 UniProtKB/TrEMBL
InterPro KAP UniProtKB/TrEMBL
PANTHER PTHR23262 UniProtKB/TrEMBL
Pfam Keratin_B2_2 UniProtKB/TrEMBL
PhenoGen AABR07044583.2 PhenoGen
UniProt D3ZNY7_RAT UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2019-11-08 AABR07044583.2        Symbol and Name status set to provisional 45752 PROVISIONAL