AC115420.1 (null) - Rat Genome Database

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Gene: AC115420.1 (null) Rattus norvegicus
Analyze
Symbol: AC115420.1
Name:
RGD ID: 15004381
Description: Predicted to be involved in protein glycosylation. Predicted to be part of oligosaccharyltransferase complex.
Type: protein-coding
Latest Assembly: mRatBN7.2 Ensembl - mRatBN7.2 Assembly Ensembl
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2 EnsemblX19,932,890 - 19,933,994 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.0 Ensembl4157,416,904 - 157,418,184 (+)EnsemblRnor6.0rn6Rnor6.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

References

Genomics

miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:34
Count of miRNA genes:30
Interacting mature miRNAs:32
Transcripts:ENSRNOT00000059520
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
9 11 15 39 45 45 16 24 16 6 101 57 21 11 21 29

Sequence

Nucleotide Sequences

Ensembl Acc Id: ENSRNOT00000059520   ⟹   ENSRNOP00000056277
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 EnsemblX19,932,890 - 19,933,994 (+)Ensembl
Rnor_6.0 Ensembl4157,416,904 - 157,418,184 (+)Ensembl
Protein Sequences
Ensembl Protein ENSRNOP00000056277.4
Ensembl Acc Id: ENSRNOP00000056277   ⟸   ENSRNOT00000059520

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-F1M0N4-F1-model_v2 AlphaFold F1M0N4 1-50 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSRNOG00000040249 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000059520.4 UniProtKB/TrEMBL
InterPro OSTC UniProtKB/TrEMBL
PANTHER OLIGOSACCHARYLTRANSFERASE COMPLEX SUBUNIT UniProtKB/TrEMBL
  PTHR13160 UniProtKB/TrEMBL
PhenoGen AC115420.1 PhenoGen
RatGTEx ENSRNOG00000040249 RatGTEx
UniProt F1M0N4_RAT UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2019-11-08 AC115420.1        Symbol and Name status set to provisional 45752 PROVISIONAL