AABR07028805.1 (null) - Rat Genome Database

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Gene: AABR07028805.1 (null) Rattus norvegicus
Analyze
Symbol: AABR07028805.1
Name:
RGD ID: 15004370
Description: Predicted to enable metal ion binding activity. Predicted to be involved in regulation of DNA-templated transcription. Predicted to be located in nucleus.
Type: protein-coding
Latest Assembly: mRatBN7.2 Ensembl - mRatBN7.2 Assembly Ensembl
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2 Ensembl172,865,527 - 2,867,486 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.0 Ensembl1786,870,404 - 86,873,003 (-)EnsemblRnor6.0rn6Rnor6.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
nucleus  (IEA)

Molecular Function

References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:52
Count of miRNA genes:44
Interacting mature miRNAs:44
Transcripts:ENSRNOT00000061526
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 2 43 39 23 19 23 8 10 74 33 38 11 8
Low 1 18 18 18 1 2 3
Below cutoff

Sequence

Nucleotide Sequences

Reference Sequences
RefSeq Acc Id: ENSRNOT00000061526   ⟹   ENSRNOP00000058244
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl172,865,527 - 2,867,486 (-)Ensembl
Rnor_6.0 Ensembl1786,870,404 - 86,873,003 (-)Ensembl
Protein Sequences
Ensembl Protein ENSRNOP00000058244.3
Reference Protein Sequences
RefSeq Acc Id: ENSRNOP00000058244   ⟸   ENSRNOT00000061526
Protein Domains
KRAB

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-F1LXX7-F1-model_v2 AlphaFold F1LXX7 1-105 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSRNOG00000040024 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000061526.3 UniProtKB/TrEMBL
Gene3D-CATH 6.10.140.140 UniProtKB/TrEMBL
InterPro KRAB UniProtKB/TrEMBL
  KRAB_dom_sf UniProtKB/TrEMBL
  Sp4-like UniProtKB/TrEMBL
PANTHER GENE 3055-RELATED UniProtKB/TrEMBL
  ZINC FINGER PROTEIN UniProtKB/TrEMBL
Pfam KRAB UniProtKB/TrEMBL
PhenoGen AABR07028805.1 PhenoGen
PROSITE KRAB UniProtKB/TrEMBL
RatGTEx ENSRNOG00000040024 RatGTEx
SMART KRAB UniProtKB/TrEMBL
Superfamily-SCOP SSF109640 UniProtKB/TrEMBL
UniProt F1LXX7_RAT UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2019-11-08 AABR07028805.1        Symbol and Name status set to provisional 45752 PROVISIONAL