AABR07055527.1 (null) - Rat Genome Database

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Gene: AABR07055527.1 (null) Rattus norvegicus
Analyze
Symbol: AABR07055527.1
Name:
RGD ID: 15004368
Description:
Type: protein-coding
Latest Assembly: mRatBN7.2 Ensembl - mRatBN7.2 Assembly Ensembl
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2 Ensembl74,352,572 - 4,353,409 (+)Ensembl
Rnor_6.0 Ensembl74,951,747 - 4,952,584 (+)EnsemblRnor6.0rn6Rnor6.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

References - curated
1. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:113
Count of miRNA genes:97
Interacting mature miRNAs:101
Transcripts:ENSRNOT00000061482
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium
Low 9 4 10 4 4 11 3
Below cutoff 1 19 30 21 8 21 5 5 53 27 24 7 5

Sequence

Nucleotide Sequences

Reference Sequences
RefSeq Acc Id: ENSRNOT00000061482   ⟹   ENSRNOP00000058202
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl74,352,572 - 4,353,409 (+)Ensembl
Rnor_6.0 Ensembl74,951,747 - 4,952,584 (+)Ensembl
Protein Sequences
Reference Sequences
RefSeq Acc Id: ENSRNOP00000058202   ⟸   ENSRNOT00000061482
Protein Domains
NPM1-C   Nucleoplasmin

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSRNOG00000039997 Ensembl, UniProtKB/TrEMBL
Ensembl Protein ENSRNOP00000058202 UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000061482 UniProtKB/TrEMBL
Gene3D-CATH 1.10.10.2100 UniProtKB/TrEMBL
InterPro NPM1_C UniProtKB/TrEMBL
  NPM1_C_sf UniProtKB/TrEMBL
  Nucleoplasmin UniProtKB/TrEMBL
  Nucleoplasmin_core_dom UniProtKB/TrEMBL
  Nucleoplasmin_core_dom_sf UniProtKB/TrEMBL
PANTHER PTHR22747 UniProtKB/TrEMBL
Pfam NPM1-C UniProtKB/TrEMBL
  Nucleoplasmin UniProtKB/TrEMBL
PhenoGen AABR07055527.1 PhenoGen
Superfamily-SCOP SSF69203 UniProtKB/TrEMBL
UniProt D3ZP59_RAT UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2019-11-08 AABR07055527.1        Symbol and Name status set to provisional 45752 PROVISIONAL