AABR07038881.1 (null) - Rat Genome Database

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Gene: AABR07038881.1 (null) Rattus norvegicus
Analyze
Symbol: AABR07038881.1
Name:
RGD ID: 15004282
Description: Predicted to enable NAD binding activity and oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor.
Type: processed_pseudogene
Latest Assembly: mRatBN7.2 Ensembl - mRatBN7.2 Assembly Ensembl
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2 Ensembl871,664,149 - 71,665,581 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.0 EnsemblX63,439,665 - 63,440,163 (-)EnsemblRnor6.0rn6Rnor6.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
cytosol  (IEA)

Molecular Function

References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:36
Count of miRNA genes:35
Interacting mature miRNAs:35
Transcripts:ENSRNOT00000048151
Prediction methods:Miranda, Pita, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium
Low 1 14 4 11 4 6 8 7 3 7 7 6
Below cutoff 1 8 10 5 7 5 2 3 6 6 9 2 2

Sequence

Nucleotide Sequences

Reference Sequences
RefSeq Acc Id: ENSRNOT00000048151
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl871,664,149 - 71,665,581 (+)Ensembl
Rnor_6.0 EnsemblX63,439,665 - 63,440,163 (-)Ensembl
Protein Sequences
Ensembl Protein ENSRNOP00000085268.1
Reference Protein Sequences
Protein Domains
Glyceraldehyde 3-phosphate dehydrogenase NAD(P)

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSRNOG00000038181 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000048151.4 UniProtKB/TrEMBL
Gene3D-CATH NAD(P)-binding Rossmann-like Domain UniProtKB/TrEMBL
InterPro GlycerAld/Erythrose_P_DH UniProtKB/TrEMBL
  GlycerAld_3-P_DH_AS UniProtKB/TrEMBL
  GlycerAld_3-P_DH_NAD(P)-bd UniProtKB/TrEMBL
  NAD(P)-bd_dom_sf UniProtKB/TrEMBL
PANTHER GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE-LIKE UniProtKB/TrEMBL
  PTHR10836 UniProtKB/TrEMBL
Pfam Gp_dh_N UniProtKB/TrEMBL
PhenoGen AABR07038881.1 PhenoGen
PRINTS G3PDHDRGNASE UniProtKB/TrEMBL
PROSITE GAPDH UniProtKB/TrEMBL
RatGTEx ENSRNOG00000038181 RatGTEx
SMART Gp_dh_N UniProtKB/TrEMBL
Superfamily-SCOP SSF51735 UniProtKB/TrEMBL
UniProt A0A8I6A1X7_RAT UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2019-11-08 AABR07038881.1        Symbol and Name status set to provisional 45752 PROVISIONAL