AABR07058017.1 (null) - Rat Genome Database

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Gene: AABR07058017.1 (null) Rattus norvegicus
Analyze
Symbol: AABR07058017.1
Name:
RGD ID: 15004043
Description:
Type: protein-coding
Latest Assembly: Rnor_6.0 Ensembl - RGSC Genome Assembly v6.0 Ensembl
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.0 Ensembl798,734,716 - 98,735,192 (-)EnsemblRnor6.0rn6Rnor6.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
nucleus  (IBA)

Molecular Function

References

References - curated
1. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:29
Count of miRNA genes:29
Interacting mature miRNAs:29
Transcripts:ENSRNOT00000051430
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium
Low 32 22 6 18 6 1 1 68 35 41 11 1
Below cutoff 2 11 23 23 1 23 7 8 6 7

Sequence

Nucleotide Sequences

Reference Sequences
RefSeq Acc Id: ENSRNOT00000051430   ⟹   ENSRNOP00000074420
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl798,734,716 - 98,735,192 (-)Ensembl
Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSRNOG00000033572 Ensembl, UniProtKB/TrEMBL
Ensembl Protein ENSRNOP00000074420 UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000051430 UniProtKB/TrEMBL
InterPro Dppa3 UniProtKB/TrEMBL
PANTHER PTHR31577 UniProtKB/TrEMBL
Pfam PGC7_Stella UniProtKB/TrEMBL
PhenoGen AABR07058017.1 PhenoGen
UniProt A0A0G2K805_RAT UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2019-11-08 AABR07058017.1        Symbol and Name status set to provisional 45752 PROVISIONAL