AABR07067813.1 (null) - Rat Genome Database

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Gene: AABR07067813.1 (null) Rattus norvegicus
Analyze
Symbol: AABR07067813.1
Name:
RGD ID: 15003986
Description:
Type: protein-coding
Latest Assembly: Rnor_6.0 Ensembl - RGSC Genome Assembly v6.0 Ensembl
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.0 Ensembl965,933,018 - 65,933,437 (+)EnsemblRnor6.0rn6Rnor6.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
1. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:129
Count of miRNA genes:103
Interacting mature miRNAs:110
Transcripts:ENSRNOT00000047929
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system endocrine system hemolymphoid system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium
Low 4 4 3
Below cutoff 1 4 5 2 2 5 3 4 7 2

Sequence

Nucleotide Sequences

Reference Sequences
RefSeq Acc Id: ENSRNOT00000047929   ⟹   ENSRNOP00000048229
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl965,933,018 - 65,933,437 (+)Ensembl
Protein Sequences
Reference Sequences
RefSeq Acc Id: ENSRNOP00000048229   ⟸   ENSRNOT00000047929
Protein Domains
CHCH

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSRNOG00000032860 Ensembl, UniProtKB/TrEMBL
Ensembl Protein ENSRNOP00000048229 UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000047929 UniProtKB/TrEMBL
InterPro CHCH UniProtKB/TrEMBL
  CHCHD4 UniProtKB/TrEMBL
PANTHER PTHR21622 UniProtKB/TrEMBL
Pfam CHCH UniProtKB/TrEMBL
PhenoGen AABR07067813.1 PhenoGen
UniProt D3ZDY6_RAT UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2019-11-08 AABR07067813.1        Symbol and Name status set to provisional 45752 PROVISIONAL