AABR07010705.1 (null) - Rat Genome Database

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Pathways
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Gene: AABR07010705.1 (null) Rattus norvegicus
Analyze
Symbol: AABR07010705.1
Name:
RGD ID: 15003972
Description: Predicted to enable histone H4K20 monomethyltransferase activity. Predicted to be involved in chromatin remodeling and methylation.
Type: protein-coding
Latest Assembly: mRatBN7.2 Ensembl - mRatBN7.2 Assembly Ensembl
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2 Ensembl2142,289,467 - 142,290,623 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.0 Ensembl2148,262,110 - 148,263,223 (+)EnsemblRnor6.0rn6Rnor6.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:39
Count of miRNA genes:39
Interacting mature miRNAs:39
Transcripts:ENSRNOT00000046641
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 2 24 10 10 1 10 29 15 24 1
Low 1 19 43 27 18 27 8 11 45 20 17 10 8
Below cutoff 4 4 4

Sequence

Nucleotide Sequences

Reference Sequences
RefSeq Acc Id: ENSRNOT00000046641   ⟹   ENSRNOP00000068870
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl2142,289,467 - 142,290,623 (+)Ensembl
Rnor_6.0 Ensembl2148,262,110 - 148,263,223 (+)Ensembl
Protein Sequences
Ensembl Protein ENSRNOP00000068870.2
Reference Protein Sequences
RefSeq Acc Id: ENSRNOP00000068870   ⟸   ENSRNOT00000046641
Protein Domains
SET

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-A0A0G2JTW4-F1-model_v2 AlphaFold A0A0G2JTW4 1-295 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSRNOG00000032715 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000046641.5 UniProtKB/TrEMBL
Gene3D-CATH 2.170.270.10 UniProtKB/TrEMBL
InterPro Hist_H4-K20_MeTrfase UniProtKB/TrEMBL
  KMT5A-like_SET UniProtKB/TrEMBL
  SET_dom UniProtKB/TrEMBL
  SET_dom_sf UniProtKB/TrEMBL
PANTHER N-LYSINE METHYLTRANSFERASE KMT5A UniProtKB/TrEMBL
  N-LYSINE METHYLTRANSFERASE KMT5A UniProtKB/TrEMBL
Pfam SET UniProtKB/TrEMBL
PhenoGen AABR07010705.1 PhenoGen
PIRSF Histone_H4-K20_mtfrase UniProtKB/TrEMBL
PROSITE SAM_MT43_PR_SET UniProtKB/TrEMBL
  SET UniProtKB/TrEMBL
RatGTEx ENSRNOG00000032715 RatGTEx
SMART SET UniProtKB/TrEMBL
Superfamily-SCOP SET domain UniProtKB/TrEMBL
UniProt A0A0G2JTW4_RAT UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2019-11-08 AABR07010705.1        Symbol and Name status set to provisional 45752 PROVISIONAL