Zfp950 (zinc finger protein 950) - Rat Genome Database

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Gene: Zfp950 (zinc finger protein 950) Rattus norvegicus
Analyze
Symbol: Zfp950
Name: zinc finger protein 950
RGD ID: 15003969
Description: Predicted to be involved in several processes, including animal organ development; face morphogenesis; and vasculogenesis.
Type: protein-coding
Latest Assembly: Rnor_6.0 Ensembl - RGSC Genome Assembly v6.0 Ensembl
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.0 Ensembl1282,490,698 - 282,492,912 (-)EnsemblRnor6.0rn6Rnor6.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

References - curated
1. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:12
Count of miRNA genes:9
Interacting mature miRNAs:9
Transcripts:ENSRNOT00000047883
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 16 2 16 2 4 4 11 8
Low 3 43 41 39 3 39 8 10 70 31 30 3 8
Below cutoff 1

Sequence

Nucleotide Sequences

Reference Sequences
RefSeq Acc Id: ENSRNOT00000047883   ⟹   ENSRNOP00000050302
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl1282,490,698 - 282,492,912 (-)Ensembl
Protein Sequences
Reference Sequences
RefSeq Acc Id: ENSRNOP00000050302   ⟸   ENSRNOT00000047883
Protein Domains
C2H2-type

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSRNOG00000032668 Ensembl, UniProtKB/TrEMBL
Ensembl Protein ENSRNOP00000050302 UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000047883 UniProtKB/TrEMBL
InterPro Znf_C2H2_sf UniProtKB/TrEMBL
  Znf_C2H2_type UniProtKB/TrEMBL
Pfam zf-C2H2 UniProtKB/TrEMBL
PhenoGen Zfp950 PhenoGen
PROSITE ZINC_FINGER_C2H2_1 UniProtKB/TrEMBL
  ZINC_FINGER_C2H2_2 UniProtKB/TrEMBL
SMART ZnF_C2H2 UniProtKB/TrEMBL
Superfamily-SCOP SSF57667 UniProtKB/TrEMBL
UniProt F1LT76_RAT UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2019-11-08 Zfp950  zinc finger protein 950      Symbol and Name status set to provisional 45752 PROVISIONAL