AABR07047293.1 (null) - Rat Genome Database

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Pathways
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Gene: AABR07047293.1 (null) Rattus norvegicus
Analyze
Symbol: AABR07047293.1
Name:
RGD ID: 15003926
Description: Predicted to enable guanyl-nucleotide exchange factor activity.
Type: protein-coding
Latest Assembly: mRatBN7.2 Ensembl - mRatBN7.2 Assembly Ensembl
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2 Ensembl539,030,901 - 39,032,104 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.0 Ensembl527,180,148 - 27,180,819 (-)EnsemblRnor6.0rn6Rnor6.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Molecular Function

References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:41
Count of miRNA genes:41
Interacting mature miRNAs:41
Transcripts:ENSRNOT00000045483
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

hemolymphoid system integumental system musculoskeletal system reproductive system appendage
High
Medium 7
Low
Below cutoff 1 2 2 2 2

Sequence

Nucleotide Sequences

Reference Sequences
RefSeq Acc Id: ENSRNOT00000045483   ⟹   ENSRNOP00000041272
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl539,030,901 - 39,032,104 (-)Ensembl
Rnor_6.0 Ensembl527,180,148 - 27,180,819 (-)Ensembl
Protein Sequences
Ensembl Protein ENSRNOP00000041272.3
Reference Protein Sequences
RefSeq Acc Id: ENSRNOP00000041272   ⟸   ENSRNOT00000045483
Protein Domains
N-terminal Ras-GEF

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D3ZLG9-F1-model_v2 AlphaFold D3ZLG9 1-224 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSRNOG00000032078 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000045483.3 UniProtKB/TrEMBL
Gene3D-CATH Son of sevenless (SoS) protein Chain: S domain 1 UniProtKB/TrEMBL
InterPro Ras-like_Gua-exchang_fac_N UniProtKB/TrEMBL
  Ras_GEF_dom_sf UniProtKB/TrEMBL
PANTHER 1700018F24RIK PROTEIN-RELATED-RELATED UniProtKB/TrEMBL
  RIKEN CDNA 4930596D02 GENE UniProtKB/TrEMBL
Pfam RasGEF_N UniProtKB/TrEMBL
PhenoGen AABR07047293.1 PhenoGen
PROSITE RASGEF_NTER UniProtKB/TrEMBL
RatGTEx ENSRNOG00000032078 RatGTEx
SMART RasGEFN UniProtKB/TrEMBL
Superfamily-SCOP SSF48366 UniProtKB/TrEMBL
UniProt D3ZLG9_RAT UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2019-11-08 AABR07047293.1        Symbol and Name status set to provisional 45752 PROVISIONAL