AABR07006688.2 (null) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)
Gene: AABR07006688.2 (null) Rattus norvegicus
Analyze
Symbol: AABR07006688.2
Name:
RGD ID: 15003900
Description: Predicted to enable translation elongation factor activity. Predicted to be involved in translational elongation. Predicted to be located in membrane. Predicted to be part of eukaryotic translation elongation factor 1 complex.
Type: protein-coding
Latest Assembly: mRatBN7.2 Ensembl - mRatBN7.2 Assembly Ensembl
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2 Ensembl1227,796,499 - 227,800,519 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.0 Ensembl1248,210,041 - 248,214,063 (+)EnsemblRnor6.0rn6Rnor6.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:23
Count of miRNA genes:20
Interacting mature miRNAs:21
Transcripts:ENSRNOT00000047024
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
9 6 43 84 80 81 50 25 50 6 185 87 66 34 54 31

Sequence

Nucleotide Sequences

Ensembl Acc Id: ENSRNOT00000047024   ⟹   ENSRNOP00000051487
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1227,796,499 - 227,800,519 (+)Ensembl
Rnor_6.0 Ensembl1248,210,041 - 248,214,063 (+)Ensembl
Protein Sequences
Ensembl Protein ENSRNOP00000051487.3
Ensembl Acc Id: ENSRNOP00000051487   ⟸   ENSRNOT00000047024
Protein Domains
Elongation factor 1 beta central acidic region

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q7TPK5-F1-model_v2 AlphaFold Q7TPK5 1-253 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSRNOG00000031628 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000047024.4 UniProtKB/TrEMBL
Gene3D-CATH 3.30.70.60 UniProtKB/TrEMBL
InterPro eEF-1beta-like_sf UniProtKB/TrEMBL
  EF-1_beta_acid_region_euk UniProtKB/TrEMBL
  EF1B_bsu/dsu UniProtKB/TrEMBL
  EF1B_bsu/dsu_GNE UniProtKB/TrEMBL
  Transl_elong_EF1B/ribosomal_S6 UniProtKB/TrEMBL
  Transl_elong_EF1B_B/D_CS UniProtKB/TrEMBL
PANTHER EF-HAND AND COILED-COIL DOMAIN-CONTAINING FAMILY MEMBER UniProtKB/TrEMBL
  ELONGATION FACTOR 1-BETA UniProtKB/TrEMBL
Pfam EF-1_beta_acid UniProtKB/TrEMBL
  EF1_GNE UniProtKB/TrEMBL
PhenoGen AABR07006688.2 PhenoGen
PROSITE EF1BD_1 UniProtKB/TrEMBL
RatGTEx ENSRNOG00000031628 RatGTEx
SMART EF-1_beta_acid UniProtKB/TrEMBL
Superfamily-SCOP SSF54984 UniProtKB/TrEMBL
UniProt F7EM91_RAT UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2019-11-08 AABR07006688.2        Symbol and Name status set to provisional 45752 PROVISIONAL