AABR07036498.1 (null) - Rat Genome Database

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Gene: AABR07036498.1 (null) Rattus norvegicus
Analyze
Symbol: AABR07036498.1
Name:
RGD ID: 15003840
Description: Predicted to enable fatty-acyl-CoA binding activity.
Type: processed_pseudogene
Latest Assembly: mRatBN7.2 Ensembl - mRatBN7.2 Assembly Ensembl
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2 Ensembl1239,165,901 - 39,166,252 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.0 Ensembl1244,890,730 - 44,890,996 (+)EnsemblRnor6.0rn6Rnor6.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Molecular Function

References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:137
Count of miRNA genes:109
Interacting mature miRNAs:119
Transcripts:ENSRNOT00000043984
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium
Low 12 4 4 10 1 1
Below cutoff 1 5 3 2 3 1 2 2 8 3 2 1

Sequence

Nucleotide Sequences

Reference Sequences
RefSeq Acc Id: ENSRNOT00000043984
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1239,165,901 - 39,166,252 (+)Ensembl
Rnor_6.0 Ensembl1244,890,730 - 44,890,996 (+)Ensembl
Protein Sequences
Reference Sequences
Protein Domains
ACB

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSRNOG00000030813 Ensembl, UniProtKB/TrEMBL
Ensembl Protein ENSRNOP00000083477.1 UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000043984.6 UniProtKB/TrEMBL
Gene3D-CATH 1.20.80.10 UniProtKB/TrEMBL
InterPro Acyl-CoA-binding_prot_CS UniProtKB/TrEMBL
  Acyl-CoA-binding_protein UniProtKB/TrEMBL
  Acyl-CoA-binding_sf UniProtKB/TrEMBL
  FERM/acyl-CoA-bd_prot_sf UniProtKB/TrEMBL
Pfam ACBP UniProtKB/TrEMBL
PhenoGen AABR07036498.1 PhenoGen
PRINTS ACOABINDINGP UniProtKB/TrEMBL
PROSITE ACB_1 UniProtKB/TrEMBL
  ACB_2 UniProtKB/TrEMBL
Superfamily-SCOP SSF47027 UniProtKB/TrEMBL
UniProt A0A8I5ZVX8_RAT UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2019-11-08 AABR07036498.1        Symbol and Name status set to provisional 45752 PROVISIONAL