AABR07072002.1 (null) - Rat Genome Database

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Gene: AABR07072002.1 (null) Rattus norvegicus
Analyze
Symbol: AABR07072002.1
Name:
RGD ID: 15003826
Description: Predicted to be located in keratin filament.
Type: protein-coding
Latest Assembly: mRatBN7.2 Ensembl - mRatBN7.2 Assembly Ensembl
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.0 Ensembl1215,450,337 - 215,451,156 (-)EnsemblRnor6.0rn6Rnor6.0


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:101
Count of miRNA genes:78
Interacting mature miRNAs:78
Transcripts:ENSRNOT00000066317
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system endocrine system hemolymphoid system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium
Low 1
Below cutoff 1 7 15 1 1 2 2 4 7 1

Sequence

Nucleotide Sequences

Reference Sequences
RefSeq Acc Id: ENSRNOT00000066317   ⟹   ENSRNOP00000060774
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl1215,450,337 - 215,451,156 (-)Ensembl
Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSRNOG00000030626 Ensembl, UniProtKB/TrEMBL
Ensembl Protein ENSRNOP00000060774 UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000066317 UniProtKB/TrEMBL
InterPro KAP UniProtKB/TrEMBL
PANTHER PTHR23262 UniProtKB/TrEMBL
Pfam Keratin_B2_2 UniProtKB/TrEMBL
PhenoGen AABR07072002.1 PhenoGen
UniProt D3ZNL6_RAT UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2019-11-08 AABR07072002.1        Symbol and Name status set to provisional 45752 PROVISIONAL