AC093995.1 (null) - Rat Genome Database

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Gene: AC093995.1 (null) Rattus norvegicus
Analyze
Symbol: AC093995.1
Name:
RGD ID: 15003646
Description: INVOLVED IN positive regulation of actin filament depolymerization (inferred)
Type: protein-coding
Latest Assembly: Rnor_6.0 Ensembl - RGSC Genome Assembly v6.0 Ensembl
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.0 Ensembl179,727,597 - 79,728,113 (+)EnsemblRnor6.0rn6Rnor6.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
1. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:105
Count of miRNA genes:85
Interacting mature miRNAs:92
Transcripts:ENSRNOT00000034790
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium
Low 4 11 3
Below cutoff 3 13 22 16 10 16 3 4 25 22 21 5 3

Sequence

Nucleotide Sequences

Reference Sequences
RefSeq Acc Id: ENSRNOT00000034790   ⟹   ENSRNOP00000035048
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl179,727,597 - 79,728,113 (+)Ensembl
Protein Sequences
Reference Sequences
RefSeq Acc Id: ENSRNOP00000035048   ⟸   ENSRNOT00000034790
Protein Domains
ADF-H

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSRNOG00000026891 Ensembl, UniProtKB/TrEMBL
Ensembl Protein ENSRNOP00000035048 UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000034790 UniProtKB/TrEMBL
Gene3D-CATH 3.40.20.10 UniProtKB/TrEMBL
InterPro ADF-H UniProtKB/TrEMBL
  ADF-H/Gelsolin-like_dom_sf UniProtKB/TrEMBL
  ADF/Cofilin UniProtKB/TrEMBL
  Dstn UniProtKB/TrEMBL
PANTHER PTHR11913 UniProtKB/TrEMBL
  PTHR11913:SF18 UniProtKB/TrEMBL
Pfam Cofilin_ADF UniProtKB/TrEMBL
PhenoGen AC093995.1 PhenoGen
PRINTS COFILIN UniProtKB/TrEMBL
PROSITE ADF_H UniProtKB/TrEMBL
SMART ADF UniProtKB/TrEMBL
UniProt D4A315_RAT UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2019-11-08 AC093995.1        Symbol and Name status set to provisional 45752 PROVISIONAL