AC099360.1 (null) - Rat Genome Database

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Gene: AC099360.1 (null) Rattus norvegicus
Analyze
Symbol: AC099360.1
Name:
RGD ID: 15003607
Description: ENCODES a protein that exhibits NAD binding (inferred); oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor (inferred); protein homodimerization activity (inferred); INVOLVED IN carbohydrate metabolic process (inferred); glycerol-3-phosphate catabolic process (inferred); FOUND IN glycerol-3-phosphate dehydrogenase complex (inferred)
Type: processed_pseudogene
Latest Assembly: mRatBN7.2 Ensembl - mRatBN7.2 Assembly Ensembl
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.0 Ensembl47,052,019 - 7,053,071 (-)EnsemblRnor6.0rn6Rnor6.0


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:99
Count of miRNA genes:87
Interacting mature miRNAs:93
Transcripts:ENSRNOT00000032728
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system appendage
High
Medium 7
Low 1 1
Below cutoff 1 4 4 1 4 2 3 1 1 2

Sequence

Nucleotide Sequences

Reference Sequences
RefSeq Acc Id: ENSRNOT00000032728
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl410,522,914 - 10,527,084 (-)Ensembl
Rnor_6.0 Ensembl47,052,019 - 7,053,071 (-)Ensembl
Protein Sequences
Reference Sequences
Protein Domains
NAD_Gly3P_dh_C   NAD_Gly3P_dh_N

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSRNOG00000025214 Ensembl, UniProtKB/TrEMBL
Ensembl Protein ENSRNOP00000095672.1 UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000032728.7 UniProtKB/TrEMBL
Gene3D-CATH 1.10.1040.10 UniProtKB/TrEMBL
InterPro 6-PGluconate_DH-like_C_sf UniProtKB/TrEMBL
  6PGD_dom2 UniProtKB/TrEMBL
  G3P_DH_NAD-dep UniProtKB/TrEMBL
  G3P_DH_NAD-dep_C UniProtKB/TrEMBL
  G3P_DH_NAD-dep_euk UniProtKB/TrEMBL
  G3P_DH_NAD-dep_N UniProtKB/TrEMBL
  NAD(P)-bd_dom_sf UniProtKB/TrEMBL
Pfam NAD_Gly3P_dh_C UniProtKB/TrEMBL
  NAD_Gly3P_dh_N UniProtKB/TrEMBL
PhenoGen AC099360.1 PhenoGen
PRINTS GPDHDRGNASE UniProtKB/TrEMBL
Superfamily-SCOP SSF48179 UniProtKB/TrEMBL
  SSF51735 UniProtKB/TrEMBL
TIGRFAMs glycerol3P_DH UniProtKB/TrEMBL
UniProt A0A8I6ALX9_RAT UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2019-11-08 AC099360.1        Symbol and Name status set to provisional 45752 PROVISIONAL