AABR07027258.1 (null) - Rat Genome Database
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Gene: AABR07027258.1 (null) Rattus norvegicus
Analyze
Symbol: AABR07027258.1
Name:
RGD ID: 15003573
Description: FOUND IN nucleoplasm (inferred)
Type: protein-coding
Latest Assembly: Rnor_6.0 Ensembl - RGSC Genome Assembly v6.0 Ensembl
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.0 Ensembl1721,430,337 - 21,484,456 (-)EnsemblRnor6.0rn6Rnor6.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

References

References - curated
1. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.

Genomics


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

endocrine system exocrine system hepatobiliary system nervous system renal system reproductive system respiratory system
High
Medium 2
Low 54 5
Below cutoff 4 4 4 16 14 26 1

Sequence

Nucleotide Sequences

Reference Sequences
RefSeq Acc Id: ENSRNOT00000038180   ⟹   ENSRNOP00000028936
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl1721,430,337 - 21,484,456 (-)Ensembl
Protein Sequences
Reference Sequences
RefSeq Acc Id: ENSRNOP00000028936   ⟸   ENSRNOT00000038180
Protein Domains
SYCP2_ARLD   SYCP2_SLD

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSRNOG00000023831 Ensembl, UniProtKB/TrEMBL
Ensembl Protein ENSRNOP00000028936 UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000038180 UniProtKB/TrEMBL
InterPro SYCP1/2 UniProtKB/TrEMBL
  SYCP2_ARLD UniProtKB/TrEMBL
  SYCP2_SLD UniProtKB/TrEMBL
PANTHER PTHR15607 UniProtKB/TrEMBL
Pfam SYCP2_ARLD UniProtKB/TrEMBL
  SYCP2_SLD UniProtKB/TrEMBL
PhenoGen AABR07027258.1 PhenoGen
UniProt F1M2G0_RAT UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2019-11-08 AABR07027258.1        Symbol and Name status set to provisional 45752 PROVISIONAL