AABR07066818.1 (null) - Rat Genome Database
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Gene: AABR07066818.1 (null) Rattus norvegicus
Analyze
Symbol: AABR07066818.1
Name:
RGD ID: 15003550
Description: ENCODES a protein that exhibits RNA binding (inferred); structural constituent of ribosome (inferred); INVOLVED IN translation (inferred); FOUND IN ribonucleoprotein complex (inferred); ribosome (inferred)
Type: protein-coding
Latest Assembly: Rnor_6.0 Ensembl - RGSC Genome Assembly v6.0 Ensembl
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.0 Ensembl917,211,759 - 17,212,628 (-)EnsemblRnor6.0rn6Rnor6.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process
translation  (IBA,IEA)

Cellular Component

Molecular Function

References

References - curated
1. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:20
Count of miRNA genes:20
Interacting mature miRNAs:20
Transcripts:ENSRNOT00000002656
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium
Low 2 28 40 24 19 24 8 10 37 20 32 8 8
Below cutoff 1 15 17 17 17 1 35 15 9 2

Sequence

Nucleotide Sequences

Reference Sequences
RefSeq Acc Id: ENSRNOT00000002656   ⟹   ENSRNOP00000057658
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl917,211,759 - 17,212,628 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000007876   ⟹   ENSRNOP00000007876
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl917,212,202 - 17,212,628 (-)Ensembl
Protein Sequences
Reference Sequences
RefSeq Acc Id: ENSRNOP00000057658   ⟸   ENSRNOT00000002656
RefSeq Acc Id: ENSRNOP00000007876   ⟸   ENSRNOT00000007876
Protein Domains
S5 DRBM

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSRNOG00000022934 Ensembl, UniProtKB/TrEMBL
Ensembl Protein ENSRNOP00000007876 UniProtKB/TrEMBL
  ENSRNOP00000057658 UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000002656 UniProtKB/TrEMBL
  ENSRNOT00000007876 UniProtKB/TrEMBL
Gene3D-CATH 3.30.230.10 UniProtKB/TrEMBL
InterPro Ribosomal_S5 UniProtKB/TrEMBL
  Ribosomal_S5_C UniProtKB/TrEMBL
  Ribosomal_S5_D2-typ_fold UniProtKB/TrEMBL
  Ribosomal_S5_D2-typ_fold_subgr UniProtKB/TrEMBL
  Ribosomal_S5_euk/arc UniProtKB/TrEMBL
  Ribosomal_S5_N UniProtKB/TrEMBL
  Ribosomal_S5_N_CS UniProtKB/TrEMBL
PANTHER PTHR13718 UniProtKB/TrEMBL
Pfam Ribosomal_S5 UniProtKB/TrEMBL
  Ribosomal_S5_C UniProtKB/TrEMBL
PhenoGen AABR07066818.1 PhenoGen
PROSITE RIBOSOMAL_S5 UniProtKB/TrEMBL
  S5_DSRBD UniProtKB/TrEMBL
Superfamily-SCOP SSF54211 UniProtKB/TrEMBL
TIGRFAMs uS5_euk_arch UniProtKB/TrEMBL
UniProt A0A0U1RVI9_RAT UniProtKB/TrEMBL
  O55213_RAT UniProtKB/TrEMBL
UniProt Secondary F1M5X9 UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2019-11-08 AABR07066818.1        Symbol and Name status set to provisional 45752 PROVISIONAL