AC139642.2 (null) - Rat Genome Database

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Gene: AC139642.2 (null) Rattus norvegicus
Analyze
Symbol: AC139642.2
Name:
RGD ID: 15003511
Description:
Type: protein-coding
Latest Assembly: GRCr8 Ensembl - GRCr8 Assembly Ensembl
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8 Ensembl4120,544,699 - 120,544,893 (-)EnsemblGRCr8
mRatBN7.2 Ensembl4118,987,300 - 118,987,494 (-)EnsemblmRatBN7.2
Rnor_6.0 Ensembl4118,341,985 - 118,342,176 (-)Ensemblrn6Rnor6.0




References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.

Genomics

miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:26
Count of miRNA genes:23
Interacting mature miRNAs:25
Transcripts:ENSRNOT00000032477
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
6 7 17 39 39 39 14 23 14 5 91 57 22 9 24 25

Sequence

Nucleotide Sequences

Ensembl Acc Id: ENSRNOT00000032477   ⟹   ENSRNOP00000035251
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl4120,544,699 - 120,544,893 (-)Ensembl
mRatBN7.2 Ensembl4118,987,300 - 118,987,494 (-)Ensembl
Rnor_6.0 Ensembl4118,341,985 - 118,342,176 (-)Ensembl
Protein Sequences
Ensembl Protein ENSRNOP00000035251.1
Ensembl Acc Id: ENSRNOP00000035251   ⟸   ENSRNOT00000032477

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-F1M6L8-F1-model_v2 AlphaFold F1M6L8 1-64 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSRNOG00000021723 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000032477.3 UniProtKB/TrEMBL
InterPro TMA7 UniProtKB/TrEMBL
PANTHER PTHR28632 UniProtKB/TrEMBL
Pfam TMA7 UniProtKB/TrEMBL
PhenoGen AC139642.2 PhenoGen
RatGTEx ENSRNOG00000021723 RatGTEx
UniProt F1M6L8_RAT UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2019-11-08 AC139642.2        Symbol and Name status set to provisional 45752 PROVISIONAL