AABR07073181.1 (null) - Rat Genome Database

Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Gene: AABR07073181.1 (null) Rattus norvegicus
Analyze
Symbol: AABR07073181.1
Name:
RGD ID: 15003506
Description: Predicted to be located in basement membrane.
Type: protein-coding
Latest Assembly: mRatBN7.2 Ensembl - mRatBN7.2 Assembly Ensembl
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2 Ensembl5149,677,476 - 149,778,594 (+)Ensembl
Rnor_6.0 Ensembl5155,812,105 - 155,885,829 (+)EnsemblRnor6.0rn6Rnor6.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

References


Genomics


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 41 17 6 13 6 8 9 23 29 34 10 8
Low 3 2 39 34 6 34 2 51 6 7 1
Below cutoff 1 1 1

Sequence

Nucleotide Sequences

Reference Sequences
RefSeq Acc Id: ENSRNOT00000039341   ⟹   ENSRNOP00000034954
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl5149,709,722 - 149,750,988 (+)Ensembl
Rnor_6.0 Ensembl5155,812,105 - 155,885,829 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000098496   ⟹   ENSRNOP00000086030
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl5149,677,476 - 149,778,594 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000105209   ⟹   ENSRNOP00000097780
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl5149,677,476 - 149,778,594 (+)Ensembl
Protein Sequences
Reference Sequences
RefSeq Acc Id: ENSRNOP00000034954   ⟸   ENSRNOT00000039341
RefSeq Acc Id: ENSRNOP00000086030   ⟸   ENSRNOT00000098496
RefSeq Acc Id: ENSRNOP00000097780   ⟸   ENSRNOT00000105209
Protein Domains
Ig-like   Laminin EGF-like   Laminin IV type A   SEA

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSRNOG00000021437 Ensembl, UniProtKB/TrEMBL
Ensembl Protein ENSRNOP00000034954 UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000039341 UniProtKB/TrEMBL
Gene3D-CATH 2.60.40.10 UniProtKB/TrEMBL
  4.10.400.10 UniProtKB/TrEMBL
InterPro EGF-like_dom UniProtKB/TrEMBL
  Ig-like_dom UniProtKB/TrEMBL
  Ig-like_dom_sf UniProtKB/TrEMBL
  Ig-like_fold UniProtKB/TrEMBL
  Ig_I-set UniProtKB/TrEMBL
  Ig_sub UniProtKB/TrEMBL
  Ig_sub2 UniProtKB/TrEMBL
  Ig_V-set UniProtKB/TrEMBL
  Laminin_EGF UniProtKB/TrEMBL
  Laminin_IV UniProtKB/TrEMBL
  LDL_receptor-like_sf UniProtKB/TrEMBL
  LDLR_class-A_CS UniProtKB/TrEMBL
  LDrepeatLR_classA_rpt UniProtKB/TrEMBL
  SEA_dom UniProtKB/TrEMBL
Pfam I-set UniProtKB/TrEMBL
  Laminin_B UniProtKB/TrEMBL
  Laminin_EGF UniProtKB/TrEMBL
  Ldl_recept_a UniProtKB/TrEMBL
PhenoGen AABR07073181.1 PhenoGen
PRINTS LDLRECEPTOR UniProtKB/TrEMBL
PROSITE EGF_LAM_1 UniProtKB/TrEMBL
  EGF_LAM_2 UniProtKB/TrEMBL
  IG_LIKE UniProtKB/TrEMBL
  LAMININ_IVA UniProtKB/TrEMBL
  LDLRA_1 UniProtKB/TrEMBL
  LDLRA_2 UniProtKB/TrEMBL
  SEA UniProtKB/TrEMBL
SMART EGF UniProtKB/TrEMBL
  EGF_Lam UniProtKB/TrEMBL
  IGc2 UniProtKB/TrEMBL
  IGv UniProtKB/TrEMBL
  LamB UniProtKB/TrEMBL
  LDLa UniProtKB/TrEMBL
  SEA UniProtKB/TrEMBL
  SM00409 UniProtKB/TrEMBL
Superfamily-SCOP SSF48726 UniProtKB/TrEMBL
  SSF57424 UniProtKB/TrEMBL
UniProt F1LTJ5_RAT UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2019-11-08 AABR07073181.1        Symbol and Name status set to provisional 45752 PROVISIONAL