AABR07006025.1 (null) - Rat Genome Database

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Gene: AABR07006025.1 (null) Rattus norvegicus
Analyze
Symbol: AABR07006025.1
Name:
RGD ID: 15003481
Description: Predicted to enable DNA binding activity.
Type: protein-coding
Latest Assembly: mRatBN7.2 Ensembl - mRatBN7.2 Assembly Ensembl
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.0 Ensembl1214,015,219 - 214,024,153 (-)EnsemblRnor6.0rn6Rnor6.0


References

References - curated
1. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.

Genomics


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium
Low 3 39 41 36 7 36 2 5 67 33 38 5 2
Below cutoff 4 16 5 12 5 6 6 7 2 3 6 6

Sequence

Nucleotide Sequences

Reference Sequences
RefSeq Acc Id: ENSRNOT00000026113   ⟹   ENSRNOP00000026113
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl1214,015,219 - 214,024,153 (-)Ensembl
Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-F1MAS3-F1-model_v2 AlphaFold F1MAS3 1-323 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSRNOG00000019293 Ensembl, UniProtKB/TrEMBL
Ensembl Protein ENSRNOP00000026113 UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000026113 UniProtKB/TrEMBL
InterPro RNA_pol_su_RPB10 UniProtKB/TrEMBL
  RNA_pol_suN_Zn-BS UniProtKB/TrEMBL
  RNAP_N/Rpb10 UniProtKB/TrEMBL
PANTHER PTHR23431 UniProtKB/TrEMBL
Pfam RNA_pol_N UniProtKB/TrEMBL
PhenoGen AABR07006025.1 PhenoGen
PROSITE RNA_POL_N_8KD UniProtKB/TrEMBL
Superfamily-SCOP SSF46924 UniProtKB/TrEMBL
UniProt F1MAS3_RAT UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2019-11-08 AABR07006025.1        Symbol and Name status set to provisional 45752 PROVISIONAL