AABR07012795.1 (null) - Rat Genome Database

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Gene: AABR07012795.1 (null) Rattus norvegicus
Analyze
Symbol: AABR07012795.1
Name:
RGD ID: 15003457
Description: ENCODES a protein that exhibits peroxidase activity (inferred); peroxiredoxin activity (inferred)
Type: protein-coding
Latest Assembly: Rnor_6.0 Ensembl - RGSC Genome Assembly v6.0 Ensembl
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.0 Ensembl2208,738,132 - 208,739,047 (+)EnsemblRnor6.0rn6Rnor6.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
cytosol  (IBA)

Molecular Function

References

References - curated
1. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:142
Count of miRNA genes:121
Interacting mature miRNAs:127
Transcripts:ENSRNOT00000023972
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 3 6 6 2 6 3 1
Low 17 51 35 17 35 8 11 51 32 36 10 8
Below cutoff 26 23 5

Sequence

Nucleotide Sequences

Reference Sequences
RefSeq Acc Id: ENSRNOT00000023972   ⟹   ENSRNOP00000072842
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl2208,738,132 - 208,739,047 (+)Ensembl
Protein Sequences
Reference Sequences
RefSeq Acc Id: ENSRNOP00000072842   ⟸   ENSRNOT00000023972
Protein Domains
Thioredoxin

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSRNOG00000017695 Ensembl, UniProtKB/TrEMBL
Ensembl Protein ENSRNOP00000072842 UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000023972 UniProtKB/TrEMBL
Gene3D-CATH 3.40.30.10 UniProtKB/TrEMBL
InterPro AhpC/TSA UniProtKB/TrEMBL
  Peroxiredoxin_AhpC-typ UniProtKB/TrEMBL
  Peroxiredoxin_C UniProtKB/TrEMBL
  Thioredoxin-like_sf UniProtKB/TrEMBL
  Thioredoxin_domain UniProtKB/TrEMBL
Pfam 1-cysPrx_C UniProtKB/TrEMBL
  AhpC-TSA UniProtKB/TrEMBL
PhenoGen AABR07012795.1 PhenoGen
PIRSF AHPC UniProtKB/TrEMBL
PROSITE THIOREDOXIN_2 UniProtKB/TrEMBL
Superfamily-SCOP SSF52833 UniProtKB/TrEMBL
UniProt A0A0G2K3Z9_RAT UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2019-11-08 AABR07012795.1        Symbol and Name status set to provisional 45752 PROVISIONAL