AABR07058934.1 (null) - Rat Genome Database

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Gene: AABR07058934.1 (null) Rattus norvegicus
Analyze
Symbol: AABR07058934.1
Name:
RGD ID: 15003434
Description: Predicted to enable beta-tubulin binding activity. Predicted to be involved in post-chaperonin tubulin folding pathway. Predicted to be located in cytoplasm and microtubule.
Type: protein-coding
Latest Assembly: mRatBN7.2 Ensembl - mRatBN7.2 Assembly Ensembl
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2 Ensembl7134,031,240 - 134,031,542 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.0 Ensembl7144,503,534 - 144,503,839 (+)EnsemblRnor6.0rn6Rnor6.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.

Genomics


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 6 6 6 6 3 6 3 3 6 6 3
Low 3 5 153 14 37 7
Below cutoff 3 46 42 28 5 28 3 3 70 71 64 3

Sequence

Nucleotide Sequences

Ensembl Acc Id: ENSRNOT00000021543   ⟹   ENSRNOP00000021543
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl7134,031,240 - 134,031,542 (+)Ensembl
Rnor_6.0 Ensembl7144,503,534 - 144,503,839 (+)Ensembl
Protein Sequences
Ensembl Protein ENSRNOP00000021543.6
Ensembl Acc Id: ENSRNOP00000021543   ⟸   ENSRNOT00000021543

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-F1M825-F1-model_v2 AlphaFold F1M825 1-102 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSRNOG00000016100 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000021543.6 UniProtKB/TrEMBL
Gene3D-CATH 1.20.58.90 UniProtKB/TrEMBL
InterPro TBCA UniProtKB/TrEMBL
  TBCA_sf UniProtKB/TrEMBL
PANTHER PTHR21500 UniProtKB/TrEMBL
  TUBULIN-SPECIFIC CHAPERONE A UniProtKB/TrEMBL
Pfam TBCA UniProtKB/TrEMBL
PhenoGen AABR07058934.1 PhenoGen
RatGTEx ENSRNOG00000016100 RatGTEx
Superfamily-SCOP SSF46988 UniProtKB/TrEMBL
UniProt F1M825_RAT UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2019-11-08 AABR07058934.1        Symbol and Name status set to provisional 45752 PROVISIONAL